Scaffold Ga0233415_10000542

Overview

Basic Information

• Taxon OID: 3300027861
• Scaffold ID: Ga0233415_10000542
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 17623
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6569
  • Long. (^o): -123.4875
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034931	Metagenome	173	N
F036312	Metagenome	170	Y
F042344	Metagenome	158	Y
F059442	Metagenome	134	Y
F076108	Metagenome	118	N
F076111	Metagenome	118	N
F079336	Metagenome	116	Y
F105502	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233415_1000054213	F059442	N/A	MRKEDRFKPYIYKVYNSRGNLEEYSRYYYTRKEALDWYNKQGKWLEKHFKRELILIDTDINLFTYLKNYDNITKNINKEILS
Ga0233415_1000054215	F079336	N/A	METILRTELETADKRIVVLESTIDTYKRILDAQDERIELMEKSHKFELENYYTKNTEL
Ga0233415_1000054217	F036312	N/A	MKHKLTHSLYEAKKVQKDLYEVCTTNYWNNGTYTVKDISHHATEREAQEQKQINKAKNEN
Ga0233415_1000054220	F076108	N/A	MTRIELSDNEIEYSTYFPIDDPHDIMYSFEEMVRMYTKADLEVDSYILQRAKEIKLKNSN
Ga0233415_1000054223	F042344	N/A	MERLFKTGIVTTLMGLTIISIAICLYISKHHNETEAGAVGALGILLLRSNDSLIGLKKK
Ga0233415_1000054228	F034931	N/A	MTNSGELIAINGVIIVNDTVENTTHADSYYVAEDTVIASLKINGLAGDVKATYISAPATAVKGGVLITPQNGAYFSAITLTSGSVVVILK
Ga0233415_1000054231	F105502	N/A	MLSSYQRLKFKKELAVKVAEELKEDIEFVILHPHTARAKNIRREVKDRNNG
Ga0233415_100005426	F076111	AGAAG	MTLEQLTTKLELNILIERVLEKNGAYITPLSKEDALKGVTLSKQTKDTLHTLKSALEQINQLYDLSIMYSKELKNKDSQIYKLSVENSKLRTRANLADQRTNNITEYIELHKNKTT