Scaffold Ga0209611_10006576

Overview

Basic Information

• Taxon OID: 3300027860
• Scaffold ID: Ga0209611_10006576
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18949
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (35.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003475	Metagenome	484	Y
F020482	Metagenome	223	Y
F026776	Metagenome	196	Y
F086501	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209611_1000657612	F003475	GAGG	MGNTPPKLHQVIGIAYNNDLNPTYGGIITSSDAYHKAKEWFLHHMNGLVLFKRYIQSLDTLELNVLIAFSLLITIGEVCMFKFETSLLGVNNVIE
Ga0209611_100065764	F020482	N/A	MEEILPNKGILEKLTREGKSMAFYTTVNKAETLNKP
Ga0209611_100065768	F086501	N/A	MPNLYKVQDQDTDLLIVLWPFTNAMVGEYVLFNAHNSSLTSEFATSFFPSYFVAQKASVAPKVPATRHVIQIDGFAFGSSPITRAKGVRVIMPQSFHPLNSKEERTLLVREEETTTPQVTKASNSPTLRVHVH
Ga0209611_100065769	F026776	GGAG	MHEMAQKLVSTSLFSFQDLKLSTRDIIAVLKDTLNTTLGPLPILDPHATGVPFNTLERHSIGSRVADGVHNLVTSFSMAKLVGSPTFNFTFTYQKGAKNTSLVDLLLSKGVVDNHSLHKVSHSFPKVVPSERTSIATRVVIVNNTESTIQVGGHTPRVVLLDIGAQPMILGVQFTKKMGMLDSKLRKSMWQIRTINGSVEKVLGESLDFITLNFNESTYQELCLQVRFLVTMATNYNVFIGQKALFPPGFRIDNWFKHAYYRVD