Scaffold Ga0209013_10032046

Overview

Basic Information

• Taxon OID: 3300027858
• Scaffold ID: Ga0209013_10032046
• Source Dataset Name: Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3875
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location

• Location Name: Coal Oil Point, Santa Barbara, CA
• Coordinates
  • Lat. (^o): 34.39192
  • Long. (^o): -119.84578
  • Depth (m): 47

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033501	Metagenome / Metatranscriptome	177	Y
F067130	Metagenome / Metatranscriptome	126	N
F070137	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209013_1003204610	F070137	N/A	MDLHLALENKHLRDLHENFRDEIWVEFHASMINNQDDFYDYFHHWIDNAVIYTRDCEAILEGNSEYHYLEHDVYSRPDNIAQAAYACLYDYIMDHNDTPNWEEMENVLDKA
Ga0209013_100320465	F033501	N/A	MNAIEFINEMNHLAEVHFGEFGYDTCSEDEKKAVIKLLLNNLNK
Ga0209013_100320469	F067130	N/A	MQVEIDTTNLQNTLEQLYDRKVKLIAYASADNIDTLVLEGHEEDLFTFYFECFNPFNEWTDADVVRSEFHAHVLTK