Scaffold Ga0209166_10000045

Overview

Basic Information

• Taxon OID: 3300027857
• Scaffold ID: Ga0209166_10000045
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 168255
• Total Scaffold Genes: 178
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 150 (84.27%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000381	Metagenome / Metatranscriptome	1210	Y
F001114	Metagenome / Metatranscriptome	774	Y
F001118	Metagenome / Metatranscriptome	773	Y
F007481	Metagenome / Metatranscriptome	350	Y
F018790	Metagenome / Metatranscriptome	233	Y
F019713	Metagenome / Metatranscriptome	228	Y
F020975	Metagenome / Metatranscriptome	221	Y
F033529	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209166_10000045165	F001118	N/A	MPVTIELHNLGDAQLCREIAASIEHALSDKRGEWRVSIAGSRASENWELRVGGLNGFERTYTLAGAAGEHQPEAIRRLILQLVPTRSS
Ga0209166_10000045166	F007481	GAG	MRQVPNANHRLDEHILRALNKIKKPSTPEEITELLNRDLGPGDQPFQVREVATWLRNDEENVLCLYWLGNRLRR
Ga0209166_1000004535	F018790	AGGAG	MAKLIEFYIPKNFRNTRVLGGQPQPGKVIEFCPQSKESGPARPARGVLGWLLAETESNHAVGRESPSHPGVA
Ga0209166_1000004537	F019713	AGGAG	VPQAMFRTREEIISDILNWVCPECGGRMGGRRQEFKCQGECRTDWRDVWESQLAKPGKNTNSPWAWRKPYKVYATTETAREVPL
Ga0209166_1000004548	F020975	AGGAG	VRGRNTTMPNARIRLFFVDAAFLAMTTFAVSAHAQLNPQSQTELTTPLEPLRPGVTASQIFDELLAHNALRAATLANYTAFRTYQVVDLKGKVHAEEIGQMEYRAPDQKKFVVTSERGSALVRHLALNALIASEIETTAGKQHHDSAISPANYSLDLLGEQQVGPYHCFVAQVVPKRKDKYLFEGKVWIDAEDYAVVRIDGHPARKLSFWIQRAEFVRQYQKIDNFWLPQRDMTFVDVRLYGKKVLTIDHHDYSVNLSVAIDGSIEKTQSLRF
Ga0209166_1000004556	F033529	GGA	VLALLLASIVDFSLDNARFDLVVMTAALVIFISGGLRSP
Ga0209166_100000458	F000381	AGGAGG	MCPACIESAAVMIAGAASTGGILAVCIGKVRRYFSPSGTSLFQKASENQEK
Ga0209166_1000004580	F001114	N/A	MSDQRGFISPDQFRPDPYTQSRIAERTLNAAIVNAEISRSYEEYLEIFDEFYADRIEGSSDIREEPIRGKPAVRSLIFGFLVPLHAMAEVGGVSVSIRQTPIAGDVVDETHSAWTLELVATTGKVCTVSWRTFRKWNDSRVVLEHHYDHQQSGEPLRDGDLSLNVLGAPGGFHRW