NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209712_10066009

Scaffold Ga0209712_10066009


Overview

Basic Information
Taxon OID3300027849 Open in IMG/M
Scaffold IDGa0209712_10066009 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2136
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium hipponense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)79.0225Long. (o)-9.5247Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063078Metagenome / Metatranscriptome130N
F100684Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209712_100660092F100684GAGGMSDINESANGDIKSKVVTEAKPRVKVKHLMRADTREFNHRMGLSDSYLVIGNTIKGGHK
Ga0209712_100660093F063078GGAGMGWLSLKAGHLITRLCARILQSTKEDNDMSRLKTDSTNNELATKKTSAGVSFSDVPEHARSRVEWIEGCHSFDGQLPSFDELPIPPILYQLPVLHPDRPRGSRAMICAHGAKGRLVGLRVGAWTITPMNDWRYAIFPDGDIGWIPTDVDLPQVLFINFRNELK

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