NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209712_10001182

Scaffold Ga0209712_10001182


Overview

Basic Information
Taxon OID3300027849 Open in IMG/M
Scaffold IDGa0209712_10001182 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22454
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (10.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)79.0225Long. (o)-9.5247Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001913Metagenome / Metatranscriptome618Y
F006002Metagenome / Metatranscriptome384Y
F011526Metagenome / Metatranscriptome290Y
F063092Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209712_1000118213F011526GAGMDNIQMIAVLECFIHHRTGKQIRIAKPSKPNHYLLLTKAYENCKAYFIK
Ga0209712_1000118218F063092N/AVVEDKLIWNGVKERITSKMSNEDFKTMCRLHAKYFNHKYQEVCTCNKNRLRQWIQELSDKLI
Ga0209712_100011824F006002N/AMRAVYCKCLNTYSIECKTNPVKGCETPEYWKQGIGNISNTDEQ
Ga0209712_100011827F001913N/AMIKQILDLLKDTDCKAEIVQLAKGKNKFPDSFKEVFTRQKQEMQWKK

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