Scaffold Ga0209089_10082606

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10082606
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2006
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049037	Metagenome / Metatranscriptome	147	N
F060975	Metagenome / Metatranscriptome	132	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_100826063	F097503	GAGG	MDCDTFDGVIEVFEHRMIEGCIANEFKCTYTEETGEFVAEINGKFYVAMIREKK
Ga0209089_100826064	F060975	AGGAG	MGKTIRRNPVAKHSEEFNKPKTVRDRKKDFYRPDSKREFEEAIEDMGFDEHNRKDAIIVQYQDDQARNQEDGWPYED
Ga0209089_100826065	F049037	N/A	MEYDETMTESPCDTCHNYWICVEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPMAIAVRELSERCGFGKETNKLKHWLGLKVYQLIEDPLGFYFLRHLDGGIEDLHEGKSSKRLRYAKAACSQVVLEAKAREGTTRQFDHLGAVVRRQMGRNVAALRGDEDQGEG