NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10064307

Scaffold Ga0209089_10064307


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10064307 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2330
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042386Metagenome / Metatranscriptome158N
F063775Metagenome129Y
F099439Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100643071F063775GAGMEIDMSLNRSIAELCESYWEFRDSDEIRTEEEESEFGALEDYLEGMGFVSHLM
Ga0209089_100643076F099439AGGAGMRQFQVEYETTLPPWRFGHEEIEAEDLTAAKKKFCSKHEAARLLKVYIVNTDNSGKP
Ga0209089_100643078F042386N/AMNNAGLPCQYQEGEKGQFELFHGPTPYLKEGDGVPKFFTLEDVEKKLGGLGEY

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