Scaffold Ga0209089_10006239

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10006239
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9690
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F007052	Metagenome / Metatranscriptome	359	Y
F016675	Metagenome / Metatranscriptome	245	Y
F021858	Metagenome / Metatranscriptome	217	Y
F039176	Metagenome	164	Y
F072760	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_1000623912	F039176	GAG	MTIDLSLNRSLEELVSSYFEAHGAGIDLDEDTRPEEIDDYYVLENYLSDMGAI
Ga0209089_1000623913	F072760	GAG	MSMERHTLRAVKITKNIFELNRLNTELQHLKICVKVLENRKIELEDSF
Ga0209089_1000623915	F000615	GAGG	MCRLRSFYECSDGTLQCTEMVVSYEEDIAGLIRHLGTGGRMVITEYFEV
Ga0209089_1000623916	F007052	GAG	MEKNETYFVARLINKGKFLSSEIFESLEEARLWAMAEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSERV
Ga0209089_1000623919	F016675	AGGAG	MKNFEVDYETTLPPWHIGHEKYEAEDLDTMKRKFHSRHEAARLMKVTEVLEDQYKSLFVS
Ga0209089_100062395	F021858	N/A	MIDVNRFENRIVNFKRISAGVETIREAEVRQIDYDQLADIPRSVTARFVKPLNAVMILDYDKTLEKFRGPLGPDMLESDFDIKEFISSSKMGVTDRTIRSPKRNRPKF