NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255041_10131378

Scaffold Ga0255041_10131378


Overview

Basic Information
Taxon OID3300027837 Open in IMG/M
Scaffold IDGa0255041_10131378 Open in IMG/M
Source Dataset NameSeawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)851
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)49.2166667Long. (o)-123.5333333Alt. (m)Depth (m)200
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010944Metagenome / Metatranscriptome297Y
F036928Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0255041_101313781F036928GGAMYSQLGYLIKALKETNERDEDIRTAKGKYQYPRTFKE
Ga0255041_101313782F010944N/ADWYAEGTTREITEYVDTEEVNINKPSLYRRISYKYNETEAILGEQYRLQNDIGYGDLRADFTFDGEEFNVEVGFDNMLFERLTDQNPSGSGLTTINVGKSITREIEPYIGQPFIFYVPDSIGGTEAFAYIQMDDTKVATTDFWLVGNVNATTAANVTKTINFGTEVDPYLLQGFSQGLYNTYWKDYITDLYDTSRRVFMYKAQLPLGIMLALKVNDKLTIGERNYIINQLKLNLTTGEAQMELLNDV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.