Scaffold Ga0209230_10017486

Overview

Basic Information

• Taxon OID: 3300027836
• Scaffold ID: Ga0209230_10017486
• Source Dataset Name: Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3385
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Canada: Lake Ontario
• Coordinates
  • Lat. (^o): 43.933506
  • Long. (^o): -78.003845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023351	Metagenome / Metatranscriptome	210	Y
F045097	Metagenome / Metatranscriptome	153	Y
F070111	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209230_100174861	F023351	GGA	MIKESKGGTFAPTDYPVIKRALHAYLVECMRVEGYSERDPHPDVVTISNLLHRLGRIQS
Ga0209230_100174864	F045097	AGG	MKTDDIKGKMIETIPYVAVFGIAALAAYGLTKLLQATKELDFPLDFGYDAYLDKIIDDEG
Ga0209230_100174865	F070111	AGAAGG	MTKISVELDIDQFDKLVVEELIRTRAQFLNDLGANANIFVWGDQEADDAEIQKHIDSLDDLIKWFGTPEQVKQVFGNED