Scaffold Ga0209230_10007392

Overview

Basic Information

• Taxon OID: 3300027836
• Scaffold ID: Ga0209230_10007392
• Source Dataset Name: Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4815
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Canada: Lake Ontario
• Coordinates
  • Lat. (^o): 43.933506
  • Long. (^o): -78.003845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025480	Metagenome	201	Y
F029657	Metagenome	187	N
F074569	Metagenome / Metatranscriptome	119	Y
F079614	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209230_1000739210	F079614	N/A	MFNLITSTGRVLSFQIKSCADMYQRAYGGVVFTQQVLDQELDNTSSYDTMIPSNEKGTEYVYNP
Ga0209230_1000739214	F074569	GAGG	MNEQIRQLLALAYEQEDEVFGSSERDEFDCLIALIEDGTINTFEELAKYGVEK
Ga0209230_100073923	F029657	AGGTGG	MKTTCKPCITIRTFFFLLKKNYQQFRKELKDYSYINQISCEMPKYKAPQTIDEGMERLKHLREVAKKNYSKEKEEELLKSVVQ
Ga0209230_100073924	F025480	GGA	MDRYKEKNCKFCEKLHKKRGLYCCQSCANRDRTEYSPNVAEAMRKVAIDYNRTPEAIAAQKLFGSGIASEDFAIDIPEIKDLSDYTEFLDGFDRGEKW