NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10103611

Scaffold Ga0209092_10103611


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10103611 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1685
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042800Metagenome157Y
F068853Metagenome124Y
F085723Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209092_101036112F068853N/AMSLKTYNKSQLAILRAVKDDLKHHLGKEIDHDPQSDPAALIELESRLADWLTVGGGGAWLRSLPEVDKNLTK
Ga0209092_101036113F042800N/AMKIHIYKDTPLGIERVNEKALTIEEARAVLKGNPNLTARDAESASYEVLHMPIDWQDEEPTCQELAIASNLSLGLKIAACISVALFIAQKLLP
Ga0209092_101036114F085723N/AMLTKIKFSAQHPTLNAMQLQSAYQLSEIDGWHVNGKTAYKEGVTLQLLENGNALK

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