Scaffold Ga0209092

Basic Information
Taxon OID	3300027833 Open in IMG/M
Scaffold ID	Ga0209092_10012843 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027833 Open in IMG/M

Scaffold ID

Ga0209092_10012843 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5997
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (5.26%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5997

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (5.26%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Fram Strait
Coordinates	Lat. (^o)	69.2303	Long. (^o)	7.7302	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

Fram Strait

Coordinates

Lat. (^o)

69.2303

Long. (^o)

7.7302

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005129	Metagenome / Metatranscriptome	411	Y
F037230	Metagenome / Metatranscriptome	168	Y
F051139	Metagenome / Metatranscriptome	144	Y
F072257	Metagenome / Metatranscriptome	121	Y
F076593	Metagenome / Metatranscriptome	118	N
F092077	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_100128431	F076593	N/A	MELTEHQKNELDAVADSVAHYIEDHLRETINWQMPDSLVDELHEDQFMDAMGYAYEKVLQLITE
Ga0209092_1001284310	F037230	N/A	MKNLTEEYVNIDWSGICEDFDLDYGDITPEQSFEIDRALGNINEVLHEFIEQNKPKVHIGQTTLTSTEHNVLMVALDHMYEHLNDLVDDRESFEEKNIILKRKVAVKSLKEMFNL
Ga0209092_100128435	F005129	N/A	MTYKVKIAEVNKSFSLAHHSYIDLGVFTVNASTYSFLYPAVKTDWACDINDTELEFLVNNKKCKYVGFKELYIQLYGNSFATFEADLIRQIEEEVAKNIIEEFPGTDVNF
Ga0209092_100128436	F092077	N/A	MNKDLSPLQRSFERINELIPHSHDVLLRCSLYEMCVELTNKSFAEGINTKY
Ga0209092_100128437	F072257	N/A	MQELDKVVHQWCDDNDRWMYIEYDRDGMVMGLNFMQGDEYELFKESWCVSDQGMTDFYKQMLYTFAYEQKNVPEHCFINSCMWAYHSAISSRDEYAEPTPCHRQCTIYKTNTTVNR
Ga0209092_100128438	F051139	N/A	MQTAKLKLPVKQFHQLYDLLGDVLDHEAETNDFNMDNSDIDLLEDIRHELFNQIPDEVPVKITYAFTAVSGATNITPVKLYEVTNRDSGGGFLITNDAGREIYCIEKGCSHLSRLGSKNWKLFTTTND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209092_10012843

Overview

Ecosystem & Geography

Associated Families

Sequences