Scaffold Ga0209092_10001096

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10001096
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27145
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (8.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000751	Metagenome / Metatranscriptome	907	Y
F002629	Metagenome / Metatranscriptome	542	Y
F010919	Metagenome / Metatranscriptome	297	Y
F011006	Metagenome / Metatranscriptome	296	Y
F015148	Metagenome / Metatranscriptome	257	Y
F018560	Metagenome / Metatranscriptome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000109618	F002629	N/A	LHKNNIMEVNKAAWEKLKKQIEYHTEQDSEITDVLINYQVKEGKKNYLKLNITIDKWDKITE
Ga0209092_100010963	F015148	N/A	MDWYSPPEYKEFECTECGADIDHEGVCSGTCHEASMI
Ga0209092_1000109630	F018560	N/A	MENTKCIAVRKDYYLLIVNDKSLGEFERSELRNILEVIDNAI
Ga0209092_1000109635	F000751	N/A	LERGFKRPRTNRTNNNIMNIYKTNFPTEQEGKDYLLSIGVLVETDNEIVFAKDTAAVVYIGKVVKIPATYDADGNIITPAIYYPGYAIDVMSSLDLDFGAFMVYPIEAAHSFYGYARNAEVPK
Ga0209092_100010964	F011006	N/A	MKKIIDKFLIKRSIRPYKVVPLSTGVIIEHYRNGKLKTEYYGLV
Ga0209092_100010966	F010919	N/A	MKETVKLPLEEFQKLYAIKLRLETYFSYMEDNRGVLKHIAPTFLDDAKEYIKEYNEIKKEYV