Basic Information | |
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Taxon OID | 3300027833 Open in IMG/M |
Scaffold ID | Ga0209092_10000883 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 30350 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (43.86%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Fram Strait | |||||||
Coordinates | Lat. (o) | 69.2303 | Long. (o) | 7.7302 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F016957 | Metagenome / Metatranscriptome | 243 | N |
F053302 | Metagenome / Metatranscriptome | 141 | Y |
F084220 | Metagenome / Metatranscriptome | 112 | N |
F099890 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209092_1000088341 | F053302 | GGA | MMDLGFIIEQLQKQEATDQDMRVAKGEWKIITKWSEAKEQIRCQLRKK |
Ga0209092_1000088346 | F084220 | N/A | MGYLDWELESYQNYHDSTCSVCGESQDPDYYDCRCEDEDDIHLGI |
Ga0209092_1000088347 | F099890 | N/A | MNLYDKLSPEAIKVLDQEMIKFPYSTKALITGLKENRYCLDLTLNQCHRVAAVFGFECTLTNIINFFE |
Ga0209092_100008837 | F016957 | N/A | MQLRKYLKEGRNLSDDRTAICVDVGKSGEALFKELTGAHKSSLADDKKHIDFYWGDMKVDVKGLKKMHHSGYILLEFINVWGGHGWCSRKSKAEYIAFQFPDAFYIFRKNHLRRRALDLCEQFDRSKILRKNWIPYQEAMYKWVGRYNAQDVFTYLKMEDVEDLIFEILPYKIKEG |
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