NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10000323

Scaffold Ga0209092_10000323


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10000323 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46379
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (80.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008389Metagenome / Metatranscriptome334Y
F009033Metagenome / Metatranscriptome324Y
F021753Metagenome / Metatranscriptome217N
F055646Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209092_1000032311F009033N/AMNLYLNQVWKRIGISLSGGADSALLAYLICKTVSTTTDIHITNQVRMWKTRPWQGPVVDRVIDWLENKFDNNFTVHKNFVPPELEEPHTTLIEDEYGKMKPGNRIILRSHNEYIAHKYNLDALYAGVNMNPDITIPGEMEERNEGVLAPHFVHNGIDICHPFVHTKKDWIIQQYYENDIVDLLNLTRSCEGEFEGLDYTTYTPGQDVPICGECFWCKEREWAIEKVK
Ga0209092_1000032343F055646GAGGMGDNYNFSYSTTNDNDSITIDVPGTNTNIWDDSFTTNPSSIYTNDSFTFTNALDGKYGLSVEGELKVDGIDVMQSIKDIQRVLGVVGRDIEKEEKYAGLKRAAEAYERELAKIETFEALKESN
Ga0209092_1000032354F008389GGAGMKIKFEAEIDTDNEQDLNTIEELISMLKKLAENYYEE
Ga0209092_1000032368F021753N/ALMVDTADAIDVDTDTRTSIDGSSIDRIALWKNHRATSGNMAFTTYNKDVNTRPTSGLMYPRVRTRRRG

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