Scaffold Ga0209092_10000323

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10000323
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46379
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (80.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008389	Metagenome / Metatranscriptome	334	Y
F009033	Metagenome / Metatranscriptome	324	Y
F021753	Metagenome / Metatranscriptome	217	N
F055646	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_1000032311	F009033	N/A	MNLYLNQVWKRIGISLSGGADSALLAYLICKTVSTTTDIHITNQVRMWKTRPWQGPVVDRVIDWLENKFDNNFTVHKNFVPPELEEPHTTLIEDEYGKMKPGNRIILRSHNEYIAHKYNLDALYAGVNMNPDITIPGEMEERNEGVLAPHFVHNGIDICHPFVHTKKDWIIQQYYENDIVDLLNLTRSCEGEFEGLDYTTYTPGQDVPICGECFWCKEREWAIEKVK
Ga0209092_1000032343	F055646	GAGG	MGDNYNFSYSTTNDNDSITIDVPGTNTNIWDDSFTTNPSSIYTNDSFTFTNALDGKYGLSVEGELKVDGIDVMQSIKDIQRVLGVVGRDIEKEEKYAGLKRAAEAYERELAKIETFEALKESN
Ga0209092_1000032354	F008389	GGAG	MKIKFEAEIDTDNEQDLNTIEELISMLKKLAENYYEE
Ga0209092_1000032368	F021753	N/A	LMVDTADAIDVDTDTRTSIDGSSIDRIALWKNHRATSGNMAFTTYNKDVNTRPTSGLMYPRVRTRRRG