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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027833 Open in IMG/M |
| Scaffold ID | Ga0209092_10000033 Open in IMG/M |
| Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 109013 |
| Total Scaffold Genes | 163 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 132 (80.98%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Fram Strait | |||||||
| Coordinates | Lat. (o) | 69.2303 | Long. (o) | 7.7302 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009293 | Metagenome / Metatranscriptome | 320 | Y |
| F055215 | Metagenome / Metatranscriptome | 139 | N |
| F056738 | Metagenome / Metatranscriptome | 137 | N |
| F090892 | Metagenome / Metatranscriptome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209092_10000033109 | F090892 | GGA | MRNTYITPKLREGETVDLSLYSPRERTNIRLYGLDFKDAIPADISEYKIKWRKNATEITIRGQLDKATRWCRTNCYHQDFIIKKYANPDDSHAVYFKNPEEAMLFRLSH |
| Ga0209092_10000033124 | F056738 | GGAG | LVKLYHFTHRKTGKKYLGQTTRDLNVYNGSSVGWLKHLDLHGYDYDTEILFESNNEKRFKDMCKFYSKKFDVVNNSEYFNQRPEHGGSLGGNANPNYKTGKYSGRTDNPELYKQLDKQKHAETWETTKQRAHPRMNFFYHKRMGNKERAEYYWNIWYSMAPKKSNNRQALWETDTFDMWYNRKGNDLNFRKLSLDKLLKMSYNIHSNWRKL |
| Ga0209092_1000003313 | F055215 | GGAG | MKIKDILKLPSIEIGDEILVGKFKNRKATVTGFATDENNQPVLKTTKGDQKLFKPRIVKLMDK |
| Ga0209092_1000003396 | F009293 | AGGAG | MTRIALDKDHASEITIHEFDAANIHSIAHSEELYKSFESGWPVVIKNLVIPGVDYDYYDGLDDWVIKDNKWIMPWYNSHIKKRDRLRDERNWTEEQIDLFHKKHKQANNGWNEVFDQLFPRYDAPERMLSHRYNMLVENKLHIDELDEQHTGNEQQIRMFVNLDKKRPRVLTFGPDLEQMWYKYKDEFNLEELDKTNIHTFISEMRNRCVWNDKKWDQFHHPLHYITFDPGDVWFFNAQWITHQIVFGAKLQCFEADIMNHSLLEPELCMAERVKNLE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |