NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000722

Scaffold Ga0209060_10000722


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000722 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49449
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (86.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000978Metagenome / Metatranscriptome815Y
F005269Metagenome / Metatranscriptome406Y
F010204Metagenome / Metatranscriptome307Y
F055566Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_1000072219F005269GGALDLVANGFLLTINDSSASYAIIRHNVRTYRSDGVIAVIRGRQNAESELKKFEDAQDSSDRHEGWRYFIEKIDLKAGTDPAEATQHRQAQLEGRESKALAETKPPNFPSPDRER
Ga0209060_1000072226F055566AGGMRKQDKPAPGSVDEMAELREHAAAQAALFNIGAEETDTEESGPDGRIGE
Ga0209060_1000072232F010204GGAGGMRSFWQQTGILGPIYRLVGEGLNDADIALKLDLTQAKVRGCVAWIVRFLELKDRQELMLYASTAA
Ga0209060_1000072238F000042AGGAGMKNIKFVVKVNRGGLAPAFVQRTDRTPVQMTTNRKLALVMGKLTAEDAIKSIRNSIGVPELVPVQVAV
Ga0209060_100007224F000978AGGAVHPIFCLRCRREIEIGHKSVAVYMFAQTVGVKPRQKSTAQRICFCPQCAVSLAMGLPPEGALNMAAWEMIRDLVSAEPSLNQAAWENLRGVVALLGSGDNETAEPRTKFRRAV
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