NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000005

Scaffold Ga0209060_10000005


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000005 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1646713
Total Scaffold Genes1400 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1036 (74.00%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000136Metagenome / Metatranscriptome1961Y
F000214Metagenome / Metatranscriptome1570Y
F000299Metagenome / Metatranscriptome1341Y
F000348Metagenome / Metatranscriptome1250Y
F000378Metagenome / Metatranscriptome1211Y
F000530Metagenome / Metatranscriptome1047Y
F000668Metagenome / Metatranscriptome948Y
F000812Metagenome / Metatranscriptome881Y
F000870Metagenome / Metatranscriptome851Y
F000883Metagenome / Metatranscriptome849Y
F003650Metagenome / Metatranscriptome475Y
F004902Metagenome / Metatranscriptome419Y
F005270Metagenome / Metatranscriptome406Y
F008699Metagenome / Metatranscriptome329Y
F040248Metagenome / Metatranscriptome162Y
F055058Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_100000051030F000530N/AMTKGKSLLLFFRNYLPVLPTVILTLMAEESESTKPETVATERPISRPFRVKLRGAVLALLRLPNRRDVRAAIHQLSITGGVVHLEKPLDEKIKVEMIFHVGTSTIRAKAEMLFPMWATQGWMQPFRFVELSDDSRTTLETNLKAYMGEAPKAAAAGA
Ga0209060_100000051078F000870GGAGMQDKSERVPSRPGTRELLWTVEPTFQGWTCSQCEWSNALPTLLRDPEARTAYDRLAASKFREHHCEDHRSRLVVPADESFTERIRKLVSHGFKPKDAVELMVQQVSIEYPKNPKVQAQAKSEGEDFLRRLRAGLI
Ga0209060_100000051093F000136GAGGMAKGKLRVLYGEGEEEILKQQAAEMEKAGHAVHQAIGRKAVQEALNKSQFDLVVLGSTLSRNDRHHLPYMVKKTNAETSVLVMHADGSRHPYVDACVDTGSSMESVLTRIEGMKIAGMMPSAAAAAAGAGR
Ga0209060_100000051262F040248AGGMDMAMKDSSPDQPGTPGTKKPYEKPSFRFEQVFVTTALACGKISVTQSTCTGNTKVS
Ga0209060_100000051266F000883GGAGMSGQVVLYFEDQADALRFALAAGSVMAGESGRFTTDLVENTTRVSRIRIEDVSGGKMKKTDPDRAA
Ga0209060_100000051285F004902AGAAGGVKRPFIRVIKWLKEIPVEATCTACNGVTFKAKGSTHRPNLIEYQNSLQQQFDEHLKLVHAEPAQRQ
Ga0209060_100000051370F000348N/ALKKALLILVAVVLAPVLVLGLAAVAAGEWHIIGQTGTGDTVSVSSVRVLKKNQRVALVRVEYKDPAHLPQGGPFVEMRARVRFNCASGTATPTSEWFYTRDRSGRDVVSKKSFHDNEFGQNPEGGFADLVSKSVCSQTK
Ga0209060_10000005173F008699AGGMRFYTDSLAFTYSNVGAAKQWWIETFDCKVADVPDDWDNTLPSDVALKFPQDDQPTILLSAQAEVDQAKFDRPSPVAFTVYCDKLKKAHELLSARGVVVGPIQDGGDMKFFDMRDIEGHLIQVCDET
Ga0209060_10000005285F055058AGGAGMKPVTIAVTLLLVCISFPISLGAAKVEVEGKAWLDAQKDPPAINVNGSWDVEDWGTLHLIQSEGSRDVSGNGGGYDLVGVVSGKKLFLLFAEKHTVEYCATLSSDGENSLAGSYSNRKSRVHSGLCQESTRPMYMKKK
Ga0209060_10000005311F000214AGGMKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEDKESASDMKPALATAVNGPPPTARIPVQTSPSIPAPQPVRAAGWEDTGKRWP
Ga0209060_10000005488F000812N/ALPDASPNPAPAPQPRRWSIFAAAFLVLALALVVIYTSRGAFLSPPALVVVSAIGLAALLLQLRLRRGPGPAVHAPLWLNILGLIFAIAAVLPDLFHLSASTMQVAALIAVVCFAVSGTVVLHALRKKTG
Ga0209060_10000005493F003650AGGCGGMNSTCLLSRTAVKTAICIFALLSPSQLFCVSDPPPPVPQEDATLEVINDSDLPETYPQALYEVQFRAHGGVPSLHWRLKEGAFAPGMKLEDYGLLHGSPERTGEFRFTLAVTDSGKPQLAVEKSFVLRVHSALTLNWRSAAHVSGNRIEGTVVVSNTTPDNVALTFRVLAVAANGRATAIGFQSLVLPRGTLDKELPFGETLPRGGYLVHVDAVGAVAPKNVIYHEQLETPSPLQVQVGP
Ga0209060_1000000563F000668GAGGLATVRSGSWDMGTIKAIVGFLAIVGVIYAGFQIIPPELTNYSFSDDLKNIAMVGGSNPHETDQELIDSVLKKAQEHELPLTAEHITVQRIGTPGAPAVYLAADYNVPISLPGYNFTLHFTPTSGNKGF
Ga0209060_10000005754F000299GGGGGMESGHNGNGSIKSIERYDIGHVQEVIRQAHEELRTLLQQRADVMKRIGTVKQTIAGLANLFGDGVLNEELMEMVDRKSSGRQPGFTKACRMILMESGRAMSARDMCEYFQQKMPALLARHKDPMASVTTVLNRLVDYGEAQAVLSGTGRRAWLWVADSNPEARFAGAAGELRC
Ga0209060_10000005859F005270GAGGMSQTPESLPDVVASLEPDQLISAKAHHRIARRQLTLTEKILFWALRLYLLFMFAVVLYQIFSPKH
Ga0209060_10000005874F000378GGAGGMEDRAPVVSPNQSSNASSLSVKHEGRGAWVLTAYSICGLTLFGVLAYFISDFIAH
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Institute for Fundamental Biomedical Research
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