Scaffold Ga0209811_10025020

Overview

Basic Information

• Taxon OID: 3300027821
• Scaffold ID: Ga0209811_10025020
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1970
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012170	Metagenome / Metatranscriptome	283	Y
F077127	Metagenome / Metatranscriptome	117	Y
F089248	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209811_100250202	F089248	AGGA	MRMRILMALSVLLLLSVGIATAAAAPKRFRASLQLCESNGGTFSTKASSSFFAPFYKQQGVLWTCNGYGGGSTASQAFVQSCANDGGQASSTLDSGLATCWKNPPF
Ga0209811_100250203	F012170	GGA	MATRTPLRDYQRSRPEPSHGLLERAEEWVEETSLAPEGEPEEGVPWHAVALLLTGLALLIAVEIALAFGIAKLVTGHAY
Ga0209811_100250204	F077127	N/A	LYVLAFGLFGWLGGIAAAGDAIARWGRETADRRRCAVSSSS