Scaffold Ga0209726_10019600

Overview

Basic Information

• Taxon OID: 3300027815
• Scaffold ID: Ga0209726_10019600
• Source Dataset Name: Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5845
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location

• Location Name: S. Glens Falls, New York, USA
• Coordinates
  • Lat. (^o): 43.292222
  • Long. (^o): -73.604444
  • Depth (m): 5.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013841	Metagenome	268	Y
F018096	Metagenome / Metatranscriptome	237	Y
F046265	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209726_100196007	F018096	GAGG	MEAIRIIMPTVDRKPCVCGATLQVSRAATIKHTREVWLCSNYCGARGLTYQGALRRKVRLDLLSWGDLRRNAQTLIEVEESGESEFVLLQ
Ga0209726_100196008	F046265	AGGAG	MNIRVIPWHMFHDALLRQPPQTLESWLRRWLFTNEGVIMAHRRVASNN
Ga0209726_100196009	F013841	GGAGG	MKLLLATMFKKVPVRKTSQRATICKRCGTRIYSLSFLKVHLESHARNSH