Scaffold Ga0209208_10045480

Overview

Basic Information

• Taxon OID: 3300027807
• Scaffold ID: Ga0209208_10045480
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3939
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Polypodiopsida → Polypodiidae → Polypodiales → Pteridineae → Pteridaceae → Parkerioideae → Ceratopteris → Ceratopteris richardii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022333	Metagenome	214	Y
F024239	Metagenome / Metatranscriptome	206	Y
F048722	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209208_100454802	F022333	GGAG	MFSIFGQNFNSIYDDHKEISLSKETDFKIEAETLDT
Ga0209208_100454804	F048722	N/A	MNINDYSIKVKNLANVLASIGALVDDEDLMAVTLNRLGKNYN
Ga0209208_100454805	F024239	AGG	MEVDKETLEKKEIVEVVVEVIEINNQIMTQINTIVRNLGIWQRIVIKGSIMHKMESCNKGIMHQLAIKVMNNYL