Scaffold Ga0209208_10015734

Overview

Basic Information

• Taxon OID: 3300027807
• Scaffold ID: Ga0209208_10015734
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9145
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Dicranidae → Pseudoditrichales → Ditrichaceae → Ceratodon → Ceratodon purpureus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018305	Metagenome	235	Y
F020482	Metagenome	223	Y
F022136	Metagenome / Metatranscriptome	215	Y
F053738	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209208_1001573410	F018305	AGG	MDKVPIYLCCWHVLKAWRLCDIEKIKDVEMQGGILQDLHDVMYRSINQGETINNFKECGKVDVRENLHKHRLSDAWTNYF
Ga0209208_1001573412	F053738	AGG	MEFDGLMTMEQNDFLMGAIVGSNDTINSSTPMERALAQLITTMQDITNECKEGDVILCEHATSHMRVLPCNIHNICFTKANAILHLGLLLYRVEDGLGNIIK
Ga0209208_100157342	F020482	N/A	MEETLPEKGIIKKLTRERKSLAFYTTINKAKTLNKP
Ga0209208_100157346	F022136	N/A	MGFSDIVHLRYNLGIAYMNIFNYGKFTSSMWILPKFVLVYRFIMQVLYVMYIGTVGILYHDMGIVMGIPSHNINF