Scaffold Ga0209208_10011957

Overview

Basic Information

• Taxon OID: 3300027807
• Scaffold ID: Ga0209208_10011957
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11066
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020482	Metagenome	223	Y
F027081	Metagenome	195	Y
F086498	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209208_100119574	F020482	N/A	MEETFLNKGILKKLTRKGKSLAFKIDVNKVETLNKP
Ga0209208_100119577	F086498	AGGAG	MAISRLFLGSPGTKSHSNVGVAGRHREYYMGEGGGFPQVWAMVILMSPELPVVCLSTKGALEIVLTNLLVCLVQVQVSN
Ga0209208_100119579	F027081	N/A	MAILPTKLVSATFLPRISFVIIVGKKDIRKLFVLPCSQNGSNSDYHDKIYQHLPLPFNQKPRHFSFPFRFSPPRVIPMRMLKRRSTMLIKKRCFKPMPLKFKLYKMNSNPLRPNLLI