NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209208_10001201

Scaffold Ga0209208_10001201


Overview

Basic Information
Taxon OID3300027807 Open in IMG/M
Scaffold IDGa0209208_10001201 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36189
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (34.21%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012093Metagenome283Y
F020482Metagenome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0209208_1000120111F020482N/AMEETFPDKGLLEKLTKEGKNLAFYTTVNKAETLNKPQP
Ga0209208_1000120113F012093GGAGMREVIQKLVNTPLFSFQDLKLNTINIIVVLEDILNITSGPLPFPDPHAIGVPFNILERHSIGSRVIDGVHNLVTSFSMAKLMGFPTSDSTFTFKKGTKNTSFVDLLFSKGVVDSHFFHKVSHSFMKVVLSKRTSIATGVTIVDNTKSAI

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