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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027807 Open in IMG/M |
| Scaffold ID | Ga0209208_10000173 Open in IMG/M |
| Source Dataset Name | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 73212 |
| Total Scaffold Genes | 86 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (41.86%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → unclassified Enterobacter cloacae complex → Enterobacter cloacae complex sp. GF14B | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004020 | Metagenome | 456 | Y |
| F022333 | Metagenome | 214 | Y |
| F024239 | Metagenome / Metatranscriptome | 206 | Y |
| F048722 | Metagenome | 147 | Y |
| F057837 | Metagenome | 135 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209208_1000017316 | F004020 | N/A | MEDHEIMFFTQILIKVEVEVLKPHFEVDTEVRMVDIINLKISLMEVDKETLKEEEVVEVVVEVIEVNNQIMTQIAIIVGNLGTWQRTVIKRSMMHEMESYNKGIMHQLAIKVLSNCL |
| Ga0209208_1000017346 | F057837 | N/A | MEVDYNTLVQNHIHYKYVFQKIMLWSGGVMVKDLILQCGSEEFKSSHLQPRLPWLLR |
| Ga0209208_1000017353 | F024239 | GAGG | METCMVDIINMKVSLMEVDEETLEEEEVVEVMVEVIEINNQMVNQTIITTRNLGTWQRIVIKRSMMHEMESYNKGIMHQLAIKVMNNCL |
| Ga0209208_1000017355 | F048722 | N/A | MNISDYSAKVKNLANALASIRAPVDDENLMVVTLNGLGKYYS |
| Ga0209208_1000017359 | F022333 | N/A | MSSIFARNFSSIDDDHKELSLSKEIDFKTEAETLDT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |