Scaffold Ga0209229_10253333

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10253333
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 782
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023344	Metagenome / Metatranscriptome	210	Y
F025671	Metagenome / Metatranscriptome	200	Y
F038241	Metagenome / Metatranscriptome	166	Y
F063708	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_102533331	F063708	AGAAGG	MTKSSHFLEYMKLHLISLEQDLEENPMSLHVVDIEGQIYATKHLL
Ga0209229_102533332	F038241	GGAGG	MLGYTKTDIDEMGNAMHDAKLFYILKSDIVRVDEDPVVDGLLKAQDFLQGLWAEGYFDND
Ga0209229_102533334	F023344	GAGG	MSDPHGIIGIYRKGGSIMEAFTDTVGEHILGAIQVDIEQHLFEQWNNKNLDEGTAYAEYMFMQFAPDNLKQSYNEYYGYIEGDEYCL
Ga0209229_102533335	F025671	N/A	QFCSECNEGSWQDEEAMKECQTHMVLLESTEKVEA