Scaffold Ga0209229_10022395

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10022395
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2734
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024535	Metagenome	205	Y
F033362	Metagenome	177	Y
F037637	Metagenome	167	Y
F104496	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100223953	F033362	N/A	MKMIPLNQFLEVIKKQGAVGVLALWLTYTHFEVQDVKERLYNCLDKNEYYNRKPIEDKQPILPAQKEDTVAILENKNRKLAKK
Ga0209229_100223955	F024535	N/A	MAKKVIDIDTKNVDINLEKDGTNVNLNVDSKNLDISYVKDELNKEFKLVGKNIDVDIKKTAGGIEVKVDSKGGIYGWIAKRIIKFILKRFKLGK
Ga0209229_100223956	F104496	N/A	MKKRTGILINSIIILLGYTYDSYLMLGAGIICLSLVLISKTKRHELKN
Ga0209229_100223958	F037637	N/A	MNWSSKQKRTKQVNVSFEWTNKSDLTAILSDLRELIASGVETYHNQKKSLEMEDKWHEIKFSQKFVDKIHESTESDINGELKLVIKSNF