Scaffold Ga0209229_10018117

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10018117
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3020
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F010248	Metagenome / Metatranscriptome	306	Y
F011938	Metagenome / Metatranscriptome	285	Y
F037227	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100181171	F011938	N/A	FIHSEQCYGTVEKLGAFASVVRYTSDGIEYNELMENDEFTIVDEIVFKHVEESE
Ga0209229_100181172	F000671	GAGG	MEKILCYSCNKSKNKLDVKKSTLLPINLLICETCVSGKLEPRWVVILAGRSNGADHVKEFIIKRRYLGSEITASELLV
Ga0209229_100181176	F010248	GAG	MRKSERLRLLEMEMLRMQFQIEYLNTAVTLLLDENKVKGPDMDAGKWYAAKLNKNK
Ga0209229_100181178	F037227	AGGAG	MAERQMTVLEGIIEDVAMELYQKLWNAIPAEEQTEDSSRAVGINSKETTLFVVQRFMDKFNAAAEELKDK