Scaffold Ga0209229_10013125

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10013125
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3524
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F005531	Metagenome / Metatranscriptome	397	Y
F006744	Metagenome / Metatranscriptome	365	Y
F008132	Metagenome / Metatranscriptome	338	Y
F021757	Metagenome	217	Y
F024319	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1001312510	F008132	AGAAG	MMTKWDTIQEDVKDAYVYLDEEEVIDEDEDDIFGFSKAIELDHLTDEELDNVATMLGIK
Ga0209229_1001312511	F024319	AGG	MTNRIWESRNDYQNDAQRLGYVACSAGCGRVTAWSLCVMCGGEYATHNLLGK
Ga0209229_100131254	F006744	AGGAG	MNLEEFKKHVTAQREASKAEALSVLSATITETNKGQ
Ga0209229_100131255	F000447	AGG	MGYIEIFRMDEEGASWVDLSEATPEELFQIEIGLLNEGAFE
Ga0209229_100131257	F021757	GGA	MITRKHYIATADILASYKDLIGDEFTFHDLVDEFAGMFAEDNPLFDADKFITACNK
Ga0209229_100131259	F005531	AGGA	MTITYTLWQGSQLLAVNQKAKNAEEIFAVIKELEKLGKGFTYNIREVDTSK