Scaffold Ga0209229

Basic Information
Taxon OID	3300027805 Open in IMG/M
Scaffold ID	Ga0209229_10006425 Open in IMG/M
Source Dataset Name	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027805 Open in IMG/M

Scaffold ID

Ga0209229_10006425 Open in IMG/M

Source Dataset Name

Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4909
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4909

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Sandusky Bay, Ohio, USA
Coordinates	Lat. (^o)	41.474889	Long. (^o)	-82.854137	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sandusky Bay, Ohio, USA

Coordinates

Lat. (^o)

41.474889

Long. (^o)

-82.854137

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002071	Metagenome / Metatranscriptome	596	Y
F003663	Metagenome / Metatranscriptome	474	Y
F005741	Metagenome / Metatranscriptome	391	Y
F006744	Metagenome / Metatranscriptome	365	Y
F058756	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100064251	F058756	AGG	MTTYNKYTWVCTGDCDALIEYTFKDGFGWPNGVMQLTCPCNSKCTLLSVEDATIPYTDTPLTKEEPMETTEHLVPDTYNSNLLVTYKKINGYSNPEYITDKVTSIEWDLHNARQSQKTVSTLQSKIDAVKEIICEAYADSQDQDTLREIAEALGIELIKEVQFTA
Ga0209229_1000642513	F006744	AGG	MNLEEFKKHVIAQREASKAEALSVLSATITKTNERENL
Ga0209229_1000642514	F000447	N/A	GWCVIMGYIEIFRINENGAGWVDLSEATPDEMLDLEIGLFQEGAL
Ga0209229_100064254	F005741	AGGA	MKNRFRVEIYDANKAHDLTIYSETGVDKEYLTELVISNLRKFQGKVNAYVFDNVKKKKTSALILDEVVVNKLNTPRTLTAIEIGLA
Ga0209229_100064256	F002071	AGGA	MEIGQTYTTTESGITGIIKAVDNHPSGVNRILLDVNGKERWTSAPAN
Ga0209229_100064258	F003663	AGGTGG	MLSTAINLLEATKDSIFDDEIMGLAGELHTRRNELSDEIFAKYLFMYSSAVASKVADSVTRVLLTEAEMSDLCDTISEMDNLTETILEENN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209229_10006425

Overview

Ecosystem & Geography

Associated Families

Sequences