Scaffold Ga0209229_10005489

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10005489
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5295
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002071	Metagenome / Metatranscriptome	596	Y
F024549	Metagenome / Metatranscriptome	205	Y
F037190	Metagenome / Metatranscriptome	168	Y
F091432	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000548910	F024549	AGGAG	MYKLTTIYDGGISKETYGYSDALEAFDAFARCVDVGFGMETATYNLTLPNGKMYTKNFDRTGLVSQK
Ga0209229_1000548915	F002071	AGGAG	MLEIGQTFTTTQSGVVGVIKAIDNHPSGVNRILLDVNGAERWTSAPAK
Ga0209229_100054892	F037190	AGGA	MDRYLVIDITSDGLAFETAQLDFYLSPLGMLLVAVSVVAYRIYKVKTNKKARY
Ga0209229_100054898	F091432	AGGA	MDLKDFRDFITAQRLAEITEKRNSNLTAILSVATATITETQRKEN