NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091432

Metagenome / Metatranscriptome Family F091432

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091432
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 45 residues
Representative Sequence MDLKEFRDFIIAQRLAETKEKRNNNLTAILSVANATITETTRKEN
Number of Associated Samples 65
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 84.11 %
% of genes near scaffold ends (potentially truncated) 26.17 %
% of genes from short scaffolds (< 2000 bps) 68.22 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (64.486 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater
(19.626 % of family members)
Environment Ontology (ENVO) Unclassified
(34.579 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(66.355 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 57.53%    β-sheet: 0.00%    Coil/Unstructured: 42.47%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF06067DUF932 2.80
PF01464SLT 1.87
PF08282Hydrolase_3 1.87
PF00534Glycos_transf_1 0.93
PF04860Phage_portal 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0560Phosphoserine phosphataseAmino acid transport and metabolism [E] 1.87
COG0561Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatasesCoenzyme transport and metabolism [H] 1.87
COG1877Trehalose-6-phosphate phosphataseCarbohydrate transport and metabolism [G] 1.87
COG2217Cation-transporting P-type ATPaseInorganic ion transport and metabolism [P] 1.87
COG3769Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamilyCarbohydrate transport and metabolism [G] 1.87


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A64.49 %
All OrganismsrootAll Organisms35.51 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001968|GOS2236_1040030All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1375Open in IMG/M
3300002835|B570J40625_100000163All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales101865Open in IMG/M
3300002835|B570J40625_100161175All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon2530Open in IMG/M
3300002835|B570J40625_100805814Not Available825Open in IMG/M
3300005525|Ga0068877_10254624Not Available1030Open in IMG/M
3300005527|Ga0068876_10042161Not Available2809Open in IMG/M
3300005527|Ga0068876_10132537Not Available1472Open in IMG/M
3300005527|Ga0068876_10303162All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage907Open in IMG/M
3300005758|Ga0078117_1000188Not Available1274Open in IMG/M
3300005758|Ga0078117_1003721All Organisms → Viruses → Predicted Viral2538Open in IMG/M
3300005758|Ga0078117_1004238Not Available15712Open in IMG/M
3300005805|Ga0079957_1024408Not Available4130Open in IMG/M
3300005805|Ga0079957_1043150All Organisms → Viruses → Predicted Viral2837Open in IMG/M
3300005805|Ga0079957_1059420Not Available2282Open in IMG/M
3300005805|Ga0079957_1072386Not Available1983Open in IMG/M
3300005805|Ga0079957_1074830All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1940Open in IMG/M
3300005805|Ga0079957_1094828All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1644Open in IMG/M
3300006030|Ga0075470_10061172All Organisms → Viruses → Predicted Viral1148Open in IMG/M
3300007169|Ga0102976_1012699Not Available1145Open in IMG/M
3300007171|Ga0102977_1001415All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C4035270Open in IMG/M
3300007171|Ga0102977_1003878All Organisms → Viruses → Predicted Viral1318Open in IMG/M
3300007177|Ga0102978_1005790All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2623Open in IMG/M
3300007177|Ga0102978_1005814Not Available1153Open in IMG/M
3300007177|Ga0102978_1081011All Organisms → Viruses → Predicted Viral1091Open in IMG/M
3300008107|Ga0114340_1128889Not Available966Open in IMG/M
3300008116|Ga0114350_1007415All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6643Open in IMG/M
3300008116|Ga0114350_1022410Not Available2605Open in IMG/M
3300008116|Ga0114350_1025460All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3582Open in IMG/M
3300008116|Ga0114350_1040913Not Available1756Open in IMG/M
3300008116|Ga0114350_1071990Not Available1175Open in IMG/M
3300008120|Ga0114355_1116042Not Available1019Open in IMG/M
3300010354|Ga0129333_10118151All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA1022444Open in IMG/M
3300010354|Ga0129333_10237073All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA1021649Open in IMG/M
3300010354|Ga0129333_10661761Not Available901Open in IMG/M
3300010354|Ga0129333_10964349Not Available718Open in IMG/M
3300010354|Ga0129333_11171306Not Available639Open in IMG/M
3300010354|Ga0129333_11566654Not Available538Open in IMG/M
3300010370|Ga0129336_10037743All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2911Open in IMG/M
3300010370|Ga0129336_10063702Not Available2189Open in IMG/M
3300011995|Ga0153800_1034992Not Available534Open in IMG/M
3300012012|Ga0153799_1003831All Organisms → Viruses → Predicted Viral3857Open in IMG/M
3300012013|Ga0153805_1010996All Organisms → Viruses → Predicted Viral1556Open in IMG/M
3300012970|Ga0129338_1133059Not Available650Open in IMG/M
3300012970|Ga0129338_1268681All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage695Open in IMG/M
3300012970|Ga0129338_1504638Not Available700Open in IMG/M
3300013087|Ga0163212_1197172Not Available630Open in IMG/M
(restricted) 3300013123|Ga0172368_10311273Not Available741Open in IMG/M
(restricted) 3300013126|Ga0172367_10193995All Organisms → Viruses → Predicted Viral1286Open in IMG/M
(restricted) 3300013126|Ga0172367_10551929Not Available625Open in IMG/M
(restricted) 3300013126|Ga0172367_10657514Not Available556Open in IMG/M
(restricted) 3300013131|Ga0172373_10089238All Organisms → Viruses → Predicted Viral2383Open in IMG/M
(restricted) 3300013131|Ga0172373_10463183Not Available778Open in IMG/M
(restricted) 3300013131|Ga0172373_10738274Not Available578Open in IMG/M
(restricted) 3300013132|Ga0172372_10019516Not Available7889Open in IMG/M
(restricted) 3300013136|Ga0172370_10294195Not Available943Open in IMG/M
(restricted) 3300013137|Ga0172375_10675707All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage655Open in IMG/M
(restricted) 3300013138|Ga0172371_10115312Not Available2470Open in IMG/M
3300017788|Ga0169931_10134857All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon2257Open in IMG/M
3300017788|Ga0169931_10256641All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1421Open in IMG/M
3300020499|Ga0208084_1000413Not Available10238Open in IMG/M
3300020516|Ga0207935_1011759Not Available1295Open in IMG/M
3300020570|Ga0208465_1008802Not Available1451Open in IMG/M
3300021961|Ga0222714_10011244All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C4037649Open in IMG/M
3300021961|Ga0222714_10393651Not Available733Open in IMG/M
3300021961|Ga0222714_10399521Not Available726Open in IMG/M
3300022200|Ga0196901_1163524All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage734Open in IMG/M
3300022752|Ga0214917_10006562All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage12028Open in IMG/M
3300022752|Ga0214917_10037998All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3468Open in IMG/M
3300024276|Ga0255205_1017560Not Available1192Open in IMG/M
3300024276|Ga0255205_1041891Not Available693Open in IMG/M
3300024280|Ga0255209_1006601All Organisms → Viruses → Predicted Viral2047Open in IMG/M
3300024280|Ga0255209_1027678Not Available890Open in IMG/M
3300024289|Ga0255147_1000080All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage41679Open in IMG/M
3300024289|Ga0255147_1010348All Organisms → Viruses → Predicted Viral2043Open in IMG/M
3300024307|Ga0255221_1015610Not Available1004Open in IMG/M
3300024351|Ga0255141_1013676All Organisms → Viruses → Predicted Viral1263Open in IMG/M
3300024481|Ga0256330_1075783Not Available712Open in IMG/M
3300024492|Ga0255189_1041142Not Available615Open in IMG/M
3300024502|Ga0255181_1084935Not Available507Open in IMG/M
3300024513|Ga0255144_1012817Not Available1459Open in IMG/M
3300024536|Ga0256338_1103189Not Available640Open in IMG/M
3300024865|Ga0256340_1088171Not Available762Open in IMG/M
3300025585|Ga0208546_1057969Not Available911Open in IMG/M
3300025585|Ga0208546_1102736Not Available639Open in IMG/M
3300025848|Ga0208005_1119488Not Available823Open in IMG/M
3300026455|Ga0255155_1002660Not Available3355Open in IMG/M
3300026570|Ga0255274_1167894Not Available549Open in IMG/M
3300026573|Ga0255269_1146835Not Available633Open in IMG/M
3300027157|Ga0255204_1007914All Organisms → Viruses → Predicted Viral2331Open in IMG/M
3300027793|Ga0209972_10102390Not Available1435Open in IMG/M
3300027793|Ga0209972_10118302Not Available1307Open in IMG/M
3300027805|Ga0209229_10005489Not Available5295Open in IMG/M
3300027806|Ga0209985_10156715Not Available1118Open in IMG/M
3300027836|Ga0209230_10797936Not Available513Open in IMG/M
3300028073|Ga0255180_1079562Not Available599Open in IMG/M
3300028083|Ga0255190_1067260Not Available524Open in IMG/M
3300028091|Ga0255184_1035256Not Available1033Open in IMG/M
3300029930|Ga0119944_1002187Not Available3409Open in IMG/M
3300029930|Ga0119944_1010564Not Available1385Open in IMG/M
3300029933|Ga0119945_1002934All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C4032468Open in IMG/M
3300031787|Ga0315900_10804187Not Available647Open in IMG/M
3300031951|Ga0315904_10347567Not Available1366Open in IMG/M
3300031951|Ga0315904_10367036Not Available1318Open in IMG/M
3300032050|Ga0315906_10937501Not Available659Open in IMG/M
3300032116|Ga0315903_10238132All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1583Open in IMG/M
3300034073|Ga0310130_0004205Not Available5917Open in IMG/M
3300034073|Ga0310130_0132753All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage757Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater19.63%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater14.95%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous7.48%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient7.48%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake6.54%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton6.54%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake5.61%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater4.67%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater4.67%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake3.74%
Lake WaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water2.80%
AquaticEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic2.80%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.80%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment1.87%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake1.87%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.87%
Fracking WaterEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water1.87%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.93%
Surface IceEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice0.93%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001968Marine microbial communities from Lake Gatun, Panama - GS020EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300005525Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaGEnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005758Cyanobacteria communities in tropical freswater systems - freshwater lake in SingaporeEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006030Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300007169Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projectsEnvironmentalOpen in IMG/M
3300007171Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projectsEnvironmentalOpen in IMG/M
3300007177Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projectsEnvironmentalOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008116Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NAEnvironmentalOpen in IMG/M
3300008120Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NAEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300011995Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012013Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface IceEnvironmentalOpen in IMG/M
3300012970Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013087Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30LEnvironmentalOpen in IMG/M
3300013123 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_11mEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300013136 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_11.5mEnvironmentalOpen in IMG/M
3300013137 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1mEnvironmentalOpen in IMG/M
3300013138 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_12mEnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300020499Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020516Freshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020570Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300024276Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8dEnvironmentalOpen in IMG/M
3300024280Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepC_8dEnvironmentalOpen in IMG/M
3300024289Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8hEnvironmentalOpen in IMG/M
3300024307Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepC_8dEnvironmentalOpen in IMG/M
3300024351Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_0hEnvironmentalOpen in IMG/M
3300024481Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024492Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_8hEnvironmentalOpen in IMG/M
3300024502Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepC_8dEnvironmentalOpen in IMG/M
3300024513Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8hEnvironmentalOpen in IMG/M
3300024536Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024865Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025585Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025848Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026455Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8hEnvironmentalOpen in IMG/M
3300026570Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026573Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027157Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepC_8hEnvironmentalOpen in IMG/M
3300027793Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300027806Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027836Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028073Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepB_8dEnvironmentalOpen in IMG/M
3300028083Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepA_8hEnvironmentalOpen in IMG/M
3300028091Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_0hEnvironmentalOpen in IMG/M
3300029930Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727EnvironmentalOpen in IMG/M
3300029933Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300034073Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XLEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GOS2236_104003053300001968MarineMDLKEFRDFITAQRLAEVKEKRNANLTAILSVANATIPTTERKDN*
B570J40625_100000163273300002835FreshwaterMDLKDFRDFITAQRLAEIKEKRNSNLTAILSVANATITETTRKEN*
B570J40625_10016117583300002835FreshwaterMDLIEFRNHILAERMAEIKEKRNNNLTAILSVANATISDNNERKEN*
B570J40625_10080581423300002835FreshwaterMDLKDFRDFITAQRLAEVKEKRNSNLTAILSVANATITETQRKEN*
Ga0068877_1025462423300005525Freshwater LakeMDLKEFRDFITAQRLAEITEKRNSNLTAILSVATATITETQRKEN*
Ga0068876_1004216193300005527Freshwater LakeMDLKDFREFIIAQRLAEVKEKRNSNLTAILSVANATITENERKEN*
Ga0068876_1013253743300005527Freshwater LakeMDLKEFRDFITAQRLAEIKEKRNANLTAILSVANATITENERKEN*
Ga0068876_1030316223300005527Freshwater LakeMDLKEFRDFIIAQRLAETKEKRQNNLSAILSVANATITETNERKTK*
Ga0078117_100018853300005758Lake WaterMDLKEFRDFINAQRLAEIKEKRNSNLTAILSVANATITETTRKEN*
Ga0078117_100372123300005758Lake WaterMDLKDFRDFINAQRLAEIKEKRNNNLTAILSVANATITETTRKEN*
Ga0078117_1004238173300005758Lake WaterMDLKDFRDFINAQRLAEIKEKRNNNLTAILSVANATIQPTTTRKEN*
Ga0079957_1024408133300005805LakeMSVASTIIQLTNERKTKMDLIDFRNHVLAERLAEIKEKRNNNLTAILSVAGATISTT
Ga0079957_104315093300005805LakeMDLKEFRDLIIAQRLAENKEKRNNNLTAILSVANATITETTRKEN*
Ga0079957_105942043300005805LakeMDLKEFRDFIIAQRLAETKEKRNANLTAILSVANATITNTNERKTK*
Ga0079957_107238653300005805LakeMDLIDFRNYILAERLAEIKEKRNNNLAAILSVANATIQELNERKTENE*
Ga0079957_107483053300005805LakeMDLKEFRDFIIAQRLAETKEKRNANLTAILSVANATITETNERKTK*
Ga0079957_109482843300005805LakeMDLKEFRDFIIAQRLAETKEKRKNNLTAILSVANATITETTGKEN*
Ga0075470_1006117233300006030AqueousMSDPSPIIQLLNERKTKMDLIEFRNHILAERMAEIKEKRNNNLTAILSVANATISDNKERKEN*
Ga0102976_101269933300007169Freshwater LakeMDLKDFRDFITAQRLAEIKEKRNNNLTAILSVANATISTTERKEN*
Ga0102977_100141513300007171Freshwater LakeRDFINAQRLAEIKEKRNSNLTAILSVANATITETTRKEN*
Ga0102977_100387853300007171Freshwater LakeMKLDEFKAYVIAQRLAETKEKRSKNLTAILSVANATITET
Ga0102978_100579053300007177Freshwater LakeMDLKDFRDFINAQRLAEIKEKRNSNLSAILSVANATMSNNERKEN*
Ga0102978_100581443300007177Freshwater LakeMDLKDFRDFINAQRLAEIKEKRNANLTAILSVANATITETTGKEN*
Ga0102978_108101123300007177Freshwater LakeMKLDEFKAYVIAQRLAETKEKRSKNLTAILSVANATITETTRKEN*
Ga0114340_112888923300008107Freshwater, PlanktonMDLKEFRDFIIAQRLAETKEKRNNNLTAILSVANATITETTRKEN*
Ga0114350_1007415153300008116Freshwater, PlanktonMDLKDFRDFITAQRLAEITEKRNSNLTAILSVATATITETQRKEN*
Ga0114350_102241093300008116Freshwater, PlanktonMDLKEFRDFITAQRLAEIKEKRNSNLTAILSVANATITETTRKEN*
Ga0114350_102546043300008116Freshwater, PlanktonMKLDEFKAYVIAQRLAETKEKRSNNLAAILSVANATITETQRKEN*
Ga0114350_104091353300008116Freshwater, PlanktonMSVASTIIQLLNERKTKMDLIEFRNHILAERMAEIKEKRNNNLTAILSVANATISDNNERKEN*
Ga0114350_107199013300008116Freshwater, PlanktonMDLKEFRDFITAQRLAEVKEKRNANLTAILSVANATITENERKEN*
Ga0114355_111604213300008120Freshwater, PlanktonMDLKDFRDLITAQRLAEVKEKRNANLTAILSVANATISETNEGKTK*
Ga0129333_1011815143300010354Freshwater To Marine Saline GradientMDLKEFRDFITAQRLAEIKEKRNANLTAILSVANATITETTRKEN*
Ga0129333_1023707353300010354Freshwater To Marine Saline GradientMDLKEFRDFITAQRLAEIKEKRNANLTAILSVANATISETTRKEN*
Ga0129333_1066176143300010354Freshwater To Marine Saline GradientMDLIDFRNHVLAERLAEIKEKRNNNLTAILSVAGATISTTTNERKTENE*
Ga0129333_1096434913300010354Freshwater To Marine Saline GradientNERKTKMDLKEFRDFITAQRLAEVKEKRNANLTAILSVANATIAETQRKEN*
Ga0129333_1117130633300010354Freshwater To Marine Saline GradientMNLEEFKALVTAQRLAEITEKRNANLTAILSVANATISETNEGKTK*
Ga0129333_1156665413300010354Freshwater To Marine Saline GradientMDLKDFRDFINAQRLAEIKEKRNSNLTAILSVANAT
Ga0129336_1003774363300010370Freshwater To Marine Saline GradientMSVAFATIRLINERKTEMDLKDFRDFITAQRLAEIKEKRNNNLTAILSVANATISTTERKEN*
Ga0129336_1006370223300010370Freshwater To Marine Saline GradientMDLKEFRDFITAQRLAEVKEKRNANLTAILSVANATIAETQRKEN*
Ga0153800_103499213300011995FreshwaterMDLKDFRDLIIAQRLAEIKEKRNNNLTAILSVANATITETTRKEN*
Ga0153799_1003831103300012012FreshwaterMDLKDFRDLIIAQRLAENKEKRNNNLTAILSVANATITETTRKEN*
Ga0153805_101099663300012013Surface IceLKDFRDLIIAQRLAEIKEKRNNNLTAILSVANATITETTRKEN*
Ga0129338_113305913300012970AqueousEMDLKDFRDFITAQRLAEVKEKRNSNLTAILSVANATITETTRKEN*
Ga0129338_126868113300012970AqueousEMDLKDFRDFITAQRLAEVKEKRNSNLTAILSVANATITETQRKEN*
Ga0129338_150463833300012970AqueousMKLDEFKAYVIAQRLAETKEKRSNNLAAILSVANATITETTRKEN*
Ga0163212_119717223300013087FreshwaterMSHPPAIISFINERKTKVDLKEFREFIIAQRLAETKEKRNANLNAMMSVANATISETKGKEN*
(restricted) Ga0172368_1031127323300013123FreshwaterMERKTKMDLKEFREFIIAQRLAETKEKRKNNLTAILSVAGATITETNERKTK*
(restricted) Ga0172367_1019399553300013126FreshwaterMERKTKMDLKEFREFIIAQRLAETKEKRNNNLTAILSVANATISNNERKEN*
(restricted) Ga0172367_1055192913300013126FreshwaterMDLKEFKEFIIAQRLAETKEKRKNNLTAILSVANATISNNERKEN*
(restricted) Ga0172367_1065751423300013126FreshwaterMDLKEFREFIIAQRLAETKEKRKNNLTAILSVAGAT
(restricted) Ga0172373_1008923873300013131FreshwaterMDLKEFREFIIAQRLAETKEKRNNNLTAILSVAGAT
(restricted) Ga0172373_1046318323300013131FreshwaterMDLKEFREFIIAQRLAETKEKRKNNLTAILSVAGATIQELNERKTK*
(restricted) Ga0172373_1073827433300013131FreshwaterMERKTKMDLKEFREFIIAQRLAETKEKRNNNLTAILSV
(restricted) Ga0172372_10019516133300013132FreshwaterMDLKEFREFIIAQRLAETKEKRNNNLTAILSVAGATIPTNNERKEN*
(restricted) Ga0172370_1029419543300013136FreshwaterMDLKEFKEFIIAQRLAETKEKRKNNLTAILSVAGATITETNERKTK*
(restricted) Ga0172375_1067570733300013137FreshwaterERKTKMDLKEFKEFIIAQRLAETKEKRKNNLTAILSVANATISNNERKEN*
(restricted) Ga0172371_1011531293300013138FreshwaterMDLKEFREFIIAQRLAETKEKRKNNLTAILSVAGATITETNERKTK*
Ga0169931_1013485763300017788FreshwaterMDLKEFKEFIIAQRLAETKEKRKNNLTAILSVANATISNNERKEN
Ga0169931_1025664133300017788FreshwaterMDLKEFREFIIAQRLAETKEKRNNNLTAILSVANATISNNERKEN
Ga0208084_1000413213300020499FreshwaterMDLKDFRDFITAQRLAEIKEKRNSNLTAILSVANATITETTRKEN
Ga0207935_101175953300020516FreshwaterMKLDEFKAYVIAQRLAETKEKRSNNLAAILSVANATITETQRKEN
Ga0208465_100880233300020570FreshwaterMDLKEFRDFITAQRLAEVKEKRNANLTAILSVANATIAETQRKEN
Ga0222714_10011244163300021961Estuarine WaterMDLKEFRDFIIAQRLAETKEKRNANLTAILSVANATITNTNERKTK
Ga0222714_1039365153300021961Estuarine WaterRKEFRDFIIAQRLAETKEKRNANLTAILSVANATIANTNERKTK
Ga0222714_1039952123300021961Estuarine WaterMKLDEFKAYVIAQRLAETKEKRSKNLSAILSVANATITETERKEN
Ga0196901_116352413300022200AqueousDLKEFRDLIIAQRLAENKEKRNNNLIAILSVANATITKTTRKEN
Ga0214917_1000656273300022752FreshwaterMDLIEFRNHILAERMAEIKEKRNNNLTAILSVANATISDNKERKEN
Ga0214917_1003799853300022752FreshwaterMDLIEFRNLINAQRLAEIKEKRNNNLTAILSVANATISDNNERKEN
Ga0255205_101756043300024276FreshwaterMKLDEFKAYVIAQRLAETKEKRSKNLSAILSVANATITNTNERKTK
Ga0255205_104189123300024276FreshwaterMDLKEFRDFIIAQRLAETKEKRQNNLSAILSVANATITETNERKTK
Ga0255209_100660153300024280FreshwaterMKLDEFKAYVIAQRLAETKEKRSKNLSAILSVANATITNTNER
Ga0255209_102767843300024280FreshwaterNSTSMKLDEFKAYVIAQRLAETKEKRSKNLSAILSVANATITETERKEN
Ga0255147_100008043300024289FreshwaterMDLKEFRDFINAQRLAEIKEKRNNNLTAILSVANATITETTRKEN
Ga0255147_101034813300024289FreshwaterMDLIEFRNHILAERMAEIKEKRNNNLTAILSVANATISDNNERKEN
Ga0255221_101561043300024307FreshwaterMKLDEFKAYVIAQRLAETKEKRSKNLSAILSVANATITETNERKTK
Ga0255141_101367613300024351FreshwaterLIEFRNLINAQRLAEIKEKRNNNLTAILSVANATISDNNERKEN
Ga0256330_107578313300024481FreshwaterMDLKEFRDFINAQRLAEIKEKRNSNLTAILSVANATITETTRKEN
Ga0255189_104114223300024492FreshwaterMDLKDFRDLINAQRLAEIKEKRNNNLTAILSVANATITETTRKEN
Ga0255181_108493513300024502FreshwaterMDLIEFRNHILAERMAEIKEKRNNNLTAILSVANATITETTRKEN
Ga0255144_101281713300024513FreshwaterMDLIEFRNLINAQRLAEIKEKRNNNLTAILSVANAT
Ga0256338_110318943300024536FreshwaterMDLKEFREFIIAQRLAEVKEKRNSNLSAILSVANATITETTRKAN
Ga0256340_108817113300024865FreshwaterKTKMDLKEFREFIIAQRLAEVKEKRNSNLSAILSVANATITETTRKEN
Ga0208546_105796913300025585AqueousMDLIEFRNHILAERMAEIKEKRNNNLTAILSVANAT
Ga0208546_110273643300025585AqueousIQLLNERKTKMDLIEFRNHILAERMAEIKEKRNNNLTAILSVANATISDNKERKEN
Ga0208005_111948833300025848AqueousMDLKDFRDFITAQRLAEVKEKRNSNLTAILSVANATISDNNERKEN
Ga0255155_100266093300026455FreshwaterMDLKEFREFIIAQRLAEVKEKRNSNLSAILSVANATITETTRKEN
Ga0255274_116789433300026570FreshwaterMDLIEFRNHILAERMAEIKEKRNNNLTAILSVANATISDNN
Ga0255269_114683543300026573FreshwaterKMDLKEFREFIIAQRLAEVKEKRNSNLSAILSVANATITETTRKEN
Ga0255204_100791413300027157FreshwaterMKLDEFKAYVIAQRLAETKEKRSKNLSAILSVANATITNTNERKT
Ga0209972_1010239053300027793Freshwater LakeMDLKEFRDFITAQRLAEITEKRNSNLTAILSVATATITETQRKEN
Ga0209972_1011830223300027793Freshwater LakeMDLKDFREFIIAQRLAEVKEKRNSNLTAILSVANATITENERKEN
Ga0209229_1000548983300027805Freshwater And SedimentMDLKDFRDFITAQRLAEITEKRNSNLTAILSVATATITETQRKEN
Ga0209985_1015671513300027806Freshwater LakeMDLKDFREFIIAQRLAEVKEKRNSNLTAILSVANAT
Ga0209230_1079793623300027836Freshwater And SedimentMDLKDFRDLIIAQRLAENKEKRNNNLTAILSVANATITETTRKEN
Ga0255180_107956213300028073FreshwaterFRNLINAQRLAEIKEKRNNNLTAILSVANATISDNNERKEN
Ga0255190_106726023300028083FreshwaterMDLKEFRDFIIAQRLAETKEKRQNNLSAILSVANA
Ga0255184_103525613300028091FreshwaterMDLKEFREFIIAQRLAEVKEKRNSNLSAILSVANATITETT
Ga0119944_100218763300029930AquaticMDLKEFRDFIIAQRLAENKEKRNANLTAILSVANATITNTNERKTK
Ga0119944_101056423300029930AquaticMDLKEFRDFITAQRLAEIKEKRNSNLAAILSVANATITETERKEN
Ga0119945_100293413300029933AquaticMDLKEFRDFITAQRLAEIKEKRNANLTAILSVANATISTNNERKEN
Ga0315900_1080418713300031787FreshwaterMDLKDFRDFITAQRLAEIKEKRNANLTAILSVANATITETERKEN
Ga0315904_1034756763300031951FreshwaterMDLKEFRDFITAQRLAEIKEKRNSNLTAILSVANATITETTRKEN
Ga0315904_1036703613300031951FreshwaterMDLKDFRDLITAQRLAEVKEKRNANLTAILSVANATISETNEGKTK
Ga0315906_1093750133300032050FreshwaterMDLKDFRDFITAQRLAEVKEKRNSNLTAILSVANATITETTRKEN
Ga0315903_1023813233300032116FreshwaterMDLKDFRDFITAQRLAEITEKRNSNLTAILSVANATITETTRKEN
Ga0310130_0004205_4835_49723300034073Fracking WaterMDLKEFRDLIIAQRLAENKEKRNNNLTAILSVANATITETTRKEN
Ga0310130_0132753_592_7323300034073Fracking WaterMDLKEFRDFIIAQRLAETKEKRNANLTAILSVANATITETNERKTK


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