Scaffold Ga0209229_10002038

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10002038
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8261
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F006653	Metagenome / Metatranscriptome	367	Y
F017972	Metagenome	237	Y
F037113	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000203810	F001477	AGGAGG	VNNIYTIHPKKSDLILLYEVVDENGDTEWGGENAEHCMQWLSLAPSNSRVLVSAWDSDEEDAHLVGQTIDITEIVRAASL
Ga0209229_1000203812	F017972	GGAGG	VRTRHLQLVSQEHSVTTRTRSIVSSPYGPVSPGSTTLLAQETLRANQEARLLELLSSLESVVENLNYKSFTAYDTLVIATEGVRAALSAIVTDEAGTE
Ga0209229_1000203822	F006653	AGGAGG	MSEQLSNKYRDNLKVDGLRADVDALKVDLTNFVGALLQSGVVELVKDEEGNIIYKINKVVLVDESVQQD
Ga0209229_100020387	F003212	GGA	MKDKYLVTLEIDTYDGDPRLWDWQILLGHEDTSKIISSEYKGRVLSTKESEGEGNE
Ga0209229_100020388	F037113	GGAG	MSKWTVWVGGSEINWQHYAYKIDAERIAEFWREVKGYDDVVVEEIA
Ga0209229_100020389	F000821	AGGAG	MNREYLEAKFDLCINEAEKDLQQEEIARAIANLRRANSALSQLFGFEEESDE