Scaffold Ga0209091_10002272

Overview

Basic Information

• Taxon OID: 3300027801
• Scaffold ID: Ga0209091_10002272
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16302
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (17.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015789	Metagenome	252	Y
F023712	Metagenome	209	Y
F066274	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209091_1000227239	F066274	N/A	MILELTSEELGWVKYALIRASASLEGRDKDMTLKEERKLLRIANKIEKQEK
Ga0209091_100022725	F015789	GAG	MKEKTVKVKGPWVDGAQTVKEIPLDEWTSFNFPPYSSSSQGEWFRVVKW
Ga0209091_100022726	F023712	N/A	MREKMKYKITWKNEDTNRVSSKEFTGKDGKDHSAMDEALEVAQEADGNLWPWVLERDGYEIADGWGGDQLNRGRLFPTCG