Scaffold Ga0209107_10000725

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000725
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18972
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (34.21%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F014228	Metagenome	264	N
F015723	Metagenome / Metatranscriptome	252	Y
F015858	Metagenome / Metatranscriptome	251	Y
F024249	Metagenome	206	N
F025437	Metagenome	201	N
F039112	Metagenome	164	Y
F082108	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000072511	F009600	N/A	MRILDPRQLSYKIVVGKVPSLNAFYASRHWTVRKNAKDKHCDEVLEQLYAMDCVQITDVHITCLVNYRYDVDNSIMVVKFALDAFKKWGAIRDDSPKYVKQIILVHSEAIAKDTAEIIFEGVIVE
Ga0209107_1000072512	F039112	N/A	MTLSFSSDVYTEMVQVQQAQIQALQNKIQELEARIDVLEQQSILFI
Ga0209107_1000072513	F015723	N/A	MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGDEVEYTKNEKGTIKIQRPNPYGASTGGGYTQSAPSFAPKGNDDRSASIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGQSAAPASHTEHFANRNDPF
Ga0209107_1000072516	F010908	GAGG	MKQIFSPFQKYECFEVDGVDYLVVDYTIVQDKDDNLVEWASEMKFKRLKDHKHFTMPITKVITNHKEGRARLCKCK
Ga0209107_1000072517	F025437	GAG	MQMRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHQSRLIYGDYQHYYKVACCVLEENPMACIDKPDFQSLELELNKLNEVVCELSKYKELYLTLKRTFDEF
Ga0209107_1000072524	F024249	N/A	MTFTYNDLKFWLEDADLLPQSYWDALEDYDPDNKNSDEILAKWLGYVHVADFYNYEMDITYVEESYNEDGYTNTVAYPTTSIYGETPKLADDIYTKWMNWATQVASEE
Ga0209107_1000072533	F082108	N/A	MLYIVTPCSRPHNLVRLKQHIPAYATWVVMMDASTNYKEATGASVTHYSTRTGDMGNPLRNEFLDLYADSFTKEDWVYYLDDDNILHPKFLEEWNNLNSLDCSIVTWGQGGRLRPTDQPQVGNIDTACYMFKPYDLPNLRFEMSYEADGIFASEAARLGTLICVEQYLCYYNALK
Ga0209107_100007254	F015858	GAG	MANSISWGIIYCSTWFGQVDETTLSIQNQSAPPCFAPANEFVEQFETRVLNDGGTFEGFDCLTAALQDLGEDTYYDIFDTYIQRMTDDGATLEGEECLIDQLFILN
Ga0209107_100007259	F014228	N/A	MNSKLNPNRLAMWPILLTATLAVVSSCATVKPVLESVIVRDTVIVTKTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVFVEATCLPDTIRVTQTKILTKERKQRGWTLEGAAVTLGLILVVAYFIKKWIDKLVE