Scaffold Ga0209107

Basic Information
Taxon OID	3300027797 Open in IMG/M
Scaffold ID	Ga0209107_10000565 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027797 Open in IMG/M

Scaffold ID

Ga0209107_10000565 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21336
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (70.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

21336

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (70.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007921	Metagenome / Metatranscriptome	342	Y
F008814	Metagenome / Metatranscriptome	327	Y
F014140	Metagenome / Metatranscriptome	265	Y
F020166	Metagenome / Metatranscriptome	225	Y
F021988	Metagenome / Metatranscriptome	216	Y
F066776	Metagenome / Metatranscriptome	126	Y
F084237	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000056524	F021988	AGG	MSNSFKKEDGTGTVPPANAGAPAGAITSRETPKKYPRQGVKIDTNKHGIRRETSLIPKPTKKPRHKKP
Ga0209107_1000056535	F008814	N/A	MDNKLTVLEEIIKEIGEELYQKWYNALAIEDRTEEASKAMSANAGETAVWVIQTFMNKFNKAADELKGD
Ga0209107_1000056544	F066776	GGA	MLNLTEQGVEIFIKKFQSSVQKSFWNNYDLVIWKKDHGGYTDTKGMYYNNAWGKAEKISVDKKGIWKLPKKYVRYFK
Ga0209107_1000056547	F014140	N/A	MNKYRIKLDVEVEVEAFNPEDASEYIHDIFNIDDEIKKVNIVKMQQK
Ga0209107_100005657	F007921	GGAGG	MIDWLVNRIFRWDPLRKAVFDEVRLYQSVDRSLWEYEKEGPTNLTWSEGDRWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWLREADAH
Ga0209107_100005658	F084237	AGGA	MSKMNDGLDRSMRLKLVIEDMLKDIDMSGEEWNDRDKNGVAYWENEGGPVDNSEERLKYMEENGI
Ga0209107_100005659	F020166	GAG	MKEPKIMKMDWRPLGYWPVYKDGKLTWEKDPDVQDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209107_10000565

Overview

Ecosystem & Geography

Associated Families

Sequences