Scaffold Ga0209107_10000308

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000308
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29009
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (47.37%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004232	Metagenome / Metatranscriptome	447	Y
F004664	Metagenome / Metatranscriptome	428	N
F007361	Metagenome / Metatranscriptome	352	N
F012111	Metagenome	283	N
F029798	Metagenome / Metatranscriptome	187	N
F097206	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000030814	F007361	GGA	MSVLFSLETDCIGLHEQGATDSNWQKSIEDYRNRYRYVADCSTYGYLPKAIVHDSVKVYVKKDAESSAKECTERFGYEVHLPSIQMLREYADKWAASNSVMTIEEGELFKVDTLRRIWIHCFHNERAFPEEKAARLITMNIQRHEPEKVFSIENGNRLVKEVF
Ga0209107_1000030818	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQGFISPRPGFIQKDYDVCLSITADSTLVTADQTNVTADGYSEECYGSSNLTGVFQCALPYIGDNGATFILMLISGNVWLYDVDQNSVQNLSASVSLQNPSNILDGWMVQAENFVVIQDGQSAPLIFNGSNLRRATTDEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRNTWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFTDPGNTPISGEIVNIAENDQASLLWSGSAVVFDNRLLMTAQPRYNAEGVIHKALMVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKTESVYGDRCFSIARGENGTIQIWEISKGAKFDNNIADGKKEIQWLVHTRAYNFEIPFGLKRLDSGDIFIDSLDGDASFNVEYRPDQYPGWIEWADWAECATTLQCQPACPLVNFQPQYRPKMRLPTPSDVPCNSSISTPTRNMYEVQMSLTITGYCRIKSIRVHAYDVQEPAVGECLVFEGCNTLDACDVNPFLYTSE
Ga0209107_100003082	F004232	N/A	MKSNQTIVAVDPGVGGGFAVSTSEGILLFPMPESLPDTAQLLSGFKLADSHLWVEKVPKFVSKLTSSASMATLHENYGIVQGLGYAQGYALHRVEPKIWQEPLGLGGRKSCETGPEWKRKLKSKAQELYPNLDVTLRNCDALLILHYALGGGR
Ga0209107_1000030821	F004664	N/A	MSKTTGYKVLNEHMVIPGGWHYRIPETGIEVPGGSWAQLNEFVRNHYTANAIQIPSNIDDLITEYACRNGADCSYDEVKIHKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEANRRANICSTCSFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDESLQSCEFCGCFIRSMVWFPIETLHKFSDATENENLPAHCWKKRPCTET
Ga0209107_1000030837	F029798	N/A	VSRGSFYLIIDMANISCADAATLIAEAQGASCMSPRERILLEIGLLWEAATLGGMADITADNTVISADVTSITADMTEFL
Ga0209107_100003084	F097206	N/A	MIHKSNRPPSPEELKHLLIMAFCMGMVITAAYFVLFVVK