NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10000099

Scaffold Ga0209107_10000099


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10000099 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52410
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (75.29%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Associated Families19

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000311Metagenome / Metatranscriptome1326Y
F000441Metagenome / Metatranscriptome1136Y
F000980Metagenome / Metatranscriptome814Y
F001125Metagenome / Metatranscriptome769Y
F001562Metagenome / Metatranscriptome670Y
F003690Metagenome / Metatranscriptome473Y
F007263Metagenome / Metatranscriptome354Y
F007644Metagenome / Metatranscriptome347Y
F009961Metagenome / Metatranscriptome310Y
F011299Metagenome / Metatranscriptome292Y
F012456Metagenome / Metatranscriptome280Y
F017829Metagenome / Metatranscriptome238Y
F030095Metagenome / Metatranscriptome186N
F031497Metagenome / Metatranscriptome182Y
F051930Metagenome / Metatranscriptome143Y
F070122Metagenome123N
F085708Metagenome / Metatranscriptome111Y
F099281Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209107_100000991F031497AGGCGGMSKTQEIKVAESLVNLMDDHWFNPTIFGRYLAEQPIYTIDRVMEMIASVISEQAKMYDVYSNQGTYTEGLSLAKELNECIKAYQESNQLVNLKLPSRSYKVKREEPTERTYQFGWREEKDPFSQP
Ga0209107_1000009911F001125AGGCGGMGDRANFGFRDSKENIVFLYGHWAGHRMLENLADAVQIAHPRWNDEAYATRIAISQMIGDEWTSETGWGISVNELADNEHKVPIIDWKNKTFTLMEEDLQTVVFSTSLEAFVAKYCSQLSMV
Ga0209107_1000009914F000311GAGMYFELTAPDRLSLEMAYWDAQITGLDPEFMPPLTFNIGTGSIEKVSRIRDKYNLKESYWSDREATGYKER
Ga0209107_1000009915F000980N/AMTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVVNATIAPITQTKEEKMEPTTTPIPESYNSNLLVTYKVIRGFSDAEYATDKITSLEWDLHNGRQSQKTVGVLNSKIDSAKEIICEAYADSQDQDTLREIAEALGIELIKEVEWSASIEVSGTYSYNILENDYDLDLESEITDAIFADSHNGNIEINDQEVCNVREN
Ga0209107_1000009918F017829AGGMANRFRVEIYDANKANDITIYSDQGVDKEYLTELVFSNIRNFSGKINAYVFDNVKKKKTTAMFLDESTVEFSKNLISNTKKVEVGI
Ga0209107_1000009925F011299N/AMTRKDYVATAEILKYASDKTHPALFSKIVNDFAEMFAKDNERFDVTRFHEASGYNVPKFTSR
Ga0209107_1000009928F007263AGGMLDTKYIDETEFYFIKDEIKFHCDESQFVYVCKAHGEQMGCYYCEFDYDTKCECEG
Ga0209107_100000993F000441AGAAGMSDNYINDQLNTAQKLLWGGSETENIEAHNIIAKLISDRIEQADLS
Ga0209107_1000009931F001562N/ALFQTLIVLNGKRSQMKSQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE
Ga0209107_1000009934F085708AGAAGMTTNRLLTTLVQLGIGIPALLMARLVWREIVSDYREWANSH
Ga0209107_1000009935F003690GGAMTISGILLELNDYGLELDSFLGAIYLPWHTILITTALLIAYKIYKRKKNK
Ga0209107_1000009947F051930AGGAGMRIQYVSTYISMSEEGLVEKLLCPVDQSLLFCNQDLEDNIFLYCLECKYLKNIGAVTYENIVKQVNLNDNNRQ
Ga0209107_100000995F000263AGGMNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLASAIEQEEISEEAMDSMVRTECEGRLDTLVELYQLTYQLSFAIGARNEA
Ga0209107_1000009951F030095AGGVAAQKNFEVDQNTTFTFEVQYLDEDQTPIQLNFHAAKLQVRDTQGGKKLAFTLTEQDGIQISPTEGKLKISISADRTNKMFYPKSAYDLVIVDPSVNKTRLLEGYMTLNRSVTV
Ga0209107_100000996F007644GGAGMKLHLISLEQDLEMNPESINVIDIPGQIEATRHLLSVATDIMNNSNERV
Ga0209107_1000009960F099281GGAMAIVNKNFKVKNGLNVAGPATFDAAVNVDNLVLNSTPLAFDSSTGRLKIQINGAWKEIALLTDAAEDTSALTFMDIGLAMDYNGQPIYTVYANGVNTTATKFADGGDYSTDTYSMTFDSGTID
Ga0209107_1000009982F070122N/AMKLDIYLQLDTQDENTGAIKKEWIFTRSVPCSAKGMISNSGTGRGGDKQTFNNKYMNEQMLEIRTPDQITYREKVTNVRDMNGNVVWKEINYPNNTPTVFEVISSTPITDPFGNVLAYNSIAKRSENQEIGF
Ga0209107_1000009983F012456N/AMSLHTTLLQRDRRIRKLDSSVALIQTASGLERLMAGSVPGVIKDSTVAQISAFLYYEAAVLSKLTTNESFKNLFKTTIFNQIEKDFGLYMDSQARTKPRSLHHVYEWNKTGIPSSRLFNLYAIEMEGLSFRINYNFKLSKSSVPTKNKKQKKKYVFGNKADVMEAGMPIVIRPRSAERLVFEMDGETVFMPKGTSVTVRKPGGAQASHQFSLSYGRFFGGQLVNSSIKSSGLQRIFNLKMAKALDVPMNIKKVQYSFTPGKIRIQADASLDAAFGGSL
Ga0209107_1000009984F009961GGAGGMTVDYKIDAMFELRKFLWKELKDSFIFDAYDYYSDNLGKEIIPIIPVQQSPEMDQFLNGKKHIIYDKIGMSYEENWLICCEKILFTIYSTDVTEIYEIRNLMTDLFRRMDESAVDVNDQNRPSKLKFHSIHIVETSPIDPSLELKGFMSTDVILEVKYSRTTDKSGRFN
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