Scaffold Ga0209139_10000361

Overview

Basic Information

• Taxon OID: 3300027795
• Scaffold ID: Ga0209139_10000361
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15433
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034322	Metagenome / Metatranscriptome	175	Y
F038326	Metagenome / Metatranscriptome	166	Y
F076319	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209139_100003611	F034322	N/A	MMAAIILVCSVVFLLQFFVSYCRSLIAASIKHPLSAEVQDVTGITNSATGDDF
Ga0209139_1000036111	F038326	GGAG	MNLKCEDRDRIFEDGTPAEWAALEAHSANCLECTEELRAWKALSVAAKELRDYSDTPSLWLRIEPALAEAAAAKQRDAGRWSWLTLGFGLSLGWQTAMAAALVVLLTVSAGWVYLHPPRPGNRGDKDQSLLKSPALAEVERAQAAYEQAIDKLALNAKPQLENPATPLQASYREKLLVLDSAINDLRAQAGMNPSNAHLRQQLLAMYQEKRQTLQDILEEKR
Ga0209139_100003613	F076319	GGAGG	MSRKLAVVFLAMLVLVGAMGLKTAVTAHGDGSLIMANGSSPAPITPYKNGSSPAPITPYKNGSSPAPITPY