NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10007375

Scaffold Ga0209972_10007375


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10007375 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7753
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (95.65%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002827Metagenome / Metatranscriptome527Y
F005146Metagenome / Metatranscriptome410Y
F010680Metagenome / Metatranscriptome300Y
F016263Metagenome / Metatranscriptome248Y
F088554Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000737511F002827AGGAGGVNKEYYQAKADLCRDLAIKQMVEGDSKEAGANLIRMVNALNELQLINYKEEKNETV
Ga0209972_1000737513F016263AGGAGGMPKCGVCGWNFSDRTLTKHAETACGLEEEKADRVAYSPEIDDLIKEMEESNEYR
Ga0209972_100073753F088554GGAGGLTEKYSWYKAALRRKKIEEAKRLKAARYVDEMNKRANDKSTTSNTQ
Ga0209972_100073755F010680AGGAGGLAIVIQLSQAEVRVCALIAVERWLVKFGSEDRPNYASGKKFGKLEPEINANIRANVAEWAVARHYNLGWNMPWYPNDLHKQRKNISDVGDLEVRTVRTQSAIPFWKKDVGRTIVGTKVLDEEYYSLVEIYGKFQADDFMIEQFSDPSIDGWRVPVELLEV
Ga0209972_100073759F005146GGAGMKLVNFYEVMDRKGDIAWGGASPSDAVEWFRRGLDNSIFVSVWNEQDIENPVLVTDKIEVTALVLATITSERSRG
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