NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10007229

Scaffold Ga0209972_10007229


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10007229 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7846
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (45.83%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004314Metagenome / Metatranscriptome444Y
F015864Metagenome / Metatranscriptome251Y
F058099Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000722916F015864N/AMTDLRYSTGTELFEFLYAKCREDHDLLAMIVDEYIVSLSDSKLIELEDFLTNNFGDD
Ga0209972_1000722920F058099GGAGGMTKQLLISQLRQGKNGNDILHILDVLCDGVDSSESSQDNVPTLDEIQF
Ga0209972_100072298F004314GAGMYDDYDLDYTYASDYSYDLDEYTQDLDEDYARDGQDYQDLAYRHYA

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