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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027793 Open in IMG/M |
| Scaffold ID | Ga0209972_10005785 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8996 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (35.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015581 | Metagenome / Metatranscriptome | 253 | Y |
| F016369 | Metagenome | 247 | Y |
| F024308 | Metagenome / Metatranscriptome | 206 | N |
| F041194 | Metagenome | 160 | Y |
| F062754 | Metagenome / Metatranscriptome | 130 | N |
| F065436 | Metagenome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209972_1000578510 | F065436 | N/A | MKYEYDIKIHSVLDYNELVKIMNKYGSDGIRVIKAEFIGDVFEKGKPMRKYVLYLEKKIK |
| Ga0209972_1000578516 | F015581 | N/A | MSELNKPNAFVFKAFIDGEYRLCVCPRINNKWSESDLVYVKDDPYKEFDDVLDNKYFSVIFVGYEQDPNGSGGFTLKNVNSNYIKSDTSIASEMYAEGSFFSTIEKGYQHFYEQSER |
| Ga0209972_1000578517 | F024308 | N/A | VKKVILTKVEYEFLVESLERLQKHTDDSLADSKWFDKMGETRRLYELELEYYKIKKYGEPSTKFHMLKWLITKVKNKTLDL |
| Ga0209972_1000578519 | F041194 | N/A | MDDITISCNYCNTPAKIKRDKIYMQCHCCDDRRIIDLREYVIQDKHHDYLYSMFNENYVFNDVDA |
| Ga0209972_100057855 | F016369 | N/A | MIRRYKAFTLIELLLVSLILVSIITTVVINFDSLMGNNKYFEARENLKTLLINLKHQSAFQQRDFELTFDENYNMYSSFDDFYLLDAVTNDLKILEASSTKIVFFLDGSVQESYIVTSNLEGTITNRFIINVIGKVDYEENDSELRSDKPTEVQRIDSE |
| Ga0209972_100057859 | F062754 | N/A | MKKLTKKDREDIKMKLFYFDKIVKETRELIKQGYTLPDLSGFIIHRP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |