NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10003956

Scaffold Ga0209972_10003956


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10003956 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11390
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009952Metagenome / Metatranscriptome310Y
F019960Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000395614F019960N/AMAVLLCFFIVMPIIGYMLYDLHFATQAAVYEVKKMKQLRREILEERNLYRGN
Ga0209972_100039565F009952GGCGGMITGQILRDAQLALFEQRDSDFLAQCREIAAQICRQQGSVSINDVRAAINLPAELHPSVLGAVFRGKKFTAIGYTEAAHKAAHARVVRVYKLTEETCQAN

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