Scaffold Ga0209972

Basic Information
Taxon OID	3300027793 Open in IMG/M
Scaffold ID	Ga0209972_10000907 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209972_10000907 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28274
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (90.70%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

28274

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (90.70%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009524	Metagenome / Metatranscriptome	316	Y
F018914	Metagenome	232	N
F026545	Metagenome	197	N
F048273	Metagenome	148	N
F066571	Metagenome	126	N
F068576	Metagenome	124	N
F093778	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000090715	F026545	GGAGG	VAGVKTKRAGAAKPPVWTVTNCTDCGKVIDYTDPKRQVFPGTRVLVIHEKGRRFEWRHKACVK
Ga0209972_1000090719	F068576	AGGAG	VDISQPSNRPKSNRVLSSRAARQRRVSSDNRGLPIEQREFQQACAAWSLKLEVKLNALFNLMPQYGKSVHWARERYYGGTFVTDADLYWVKSRIDDQPDHSIAAKMQRYAAAVDLMCRVCAGDEDTTPTCWDKTCPLRSVSPLPLRVAK
Ga0209972_100009072	F093778	AGGA	MDAELQALDAAMAAAAAHGWQVILIDQIDGVWTAIASDKMDGEPLVTGTGATRTDALLALTAALEAR
Ga0209972_1000090720	F066571	GGTGG	MRYDSCATARPFGVLPSLALPVVSSHRQGLTWGSVDARTTIMAIAGQRQTSGATPLLLHHYRRANG
Ga0209972_1000090721	F018914	AGGAGG	MAKQDKFAVLKAWVSESQTVMGLDHWEVTIVEAASDVDSWADIDAHPQQPTADLRVAFDFWKQEPEKQRLILTHELLHLVLARYARISENLEESLGKLAWAVIEPQLEDGEERTIEHLARIIAPYLSLPAFPKA
Ga0209972_100009073	F048273	GGAGG	MTPRQIDQLIERLDAHSAKLDQVRSDVDRIKGGLVVIAALLFSVLIPLLASLLSK
Ga0209972_1000090737	F009524	N/A	MNDLTILDAIATRLTAVTKPAGYTLRKAYATPPESLPVVPCAVLFPGGDQITVGNGNRTTVLTVNVVVYLLPIPRMDDKYRDLYTWRSWLRTAFDGAVTISGNAVQVAVTGTTLGTDTYADQDYLTVQATAEVTVYDTVAFTA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209972_10000907

Overview

Ecosystem & Geography

Associated Families

Sequences