Scaffold Ga0209287_10028367

Overview

Basic Information

• Taxon OID: 3300027792
• Scaffold ID: Ga0209287_10028367
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2032
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0991
  • Long. (^o): -99.1044
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031852	Metagenome	181	Y
F060633	Metagenome	132	N
F085232	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209287_100283673	F060633	N/A	MAGSLFDMRNLMWLEANLKVSFYQPEKLEQGMIFMNSLYPGTDREFVELWLLEEDIVEEEYDNFINKNGFPVEIMITMEMSNPDEPDYIVAYFPEIGWVHQDDDSIREFDIDDANWIIQNNGGSVCVLIDEEAYDQDGTIYTITEEQEVIMKYQFDYDDYEDLED
Ga0209287_100283675	F085232	N/A	MKKLFKANNEIKRPGDLAPRGVKSTIRGTYGFNEVFEHIFTESRKPDPSWKKN
Ga0209287_100283676	F031852	N/A	MEVYLGKQAKSLFYGRDVPINSIGVFQTIGGDWLYWFNDDWTYDTGCADTEVEAMETAKRNFKARKKLNDEEII