Metagenome Family F085232

Basic Information
Family ID	F085232
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	48 residues
Representative Sequence	MKKQIKRTGDLAPTGVKSTIKGTYGFNEVFDHIFNEARKPDPSWKNN
Number of Associated Samples	79
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	2.70 %
% of genes near scaffold ends (potentially truncated)	12.61 %
% of genes from short scaffolds (< 2000 bps)	66.67 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Archaea (46.847 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (29.730 % of family members)
Environment Ontology (ENVO)	Unclassified (48.649 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (48.649 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. 1B570J29032_1090112131 2JGI25920J50251_100559703 3Ga0065166_100124604 4Ga0066600_100311266 5Ga0007787_1000554813 6Ga0007787_101883384 7Ga0070374_106602382 8Ga0068877_107013242 9Ga0068876_102748481 10Ga0068876_103791742 11Ga0049081_102768731 12Ga0078894_114697432 13Ga0079957_10664617 14Ga0070748_10669154 15Ga0099847_100008121 16Ga0099846_10781582 17Ga0114347_11227013 18Ga0114363_100594516 19Ga0114363_10236562 20Ga0114363_10299988 21Ga0114364_10115212 22Ga0114364_10177484 23Ga0114364_11519333 24Ga0105105_105943471 25Ga0105098_100745434 26Ga0105098_102910822 27Ga0105099_100310125 28Ga0105099_111015421 29Ga0105103_100756173 30Ga0105102_103270572 31Ga0105102_105668022 32Ga0105104_109437593 33Ga0105097_101148974 34Ga0105097_101778833 35Ga0129333_116917993 36Ga0151620_100140211 37Ga0136712_10055464 38Ga0157210_100024827 39Ga0164293_101257514 40Ga0164294_1000642825 41Ga0172373_102597303 42Ga0177922_112237943 43Ga0181338_10143827 44Ga0181338_10374282 45Ga0181338_10419434 46Ga0180120_100360617 47Ga0181339_100383010 48Ga0181347_11152912 49Ga0181347_12101571 50Ga0181362_10280842 51Ga0181344_101343810 52Ga0181344_10806272 53Ga0181356_10350935 54Ga0181355_11680805 55Ga0181361_1174032 56Ga0181359_10009996 57Ga0181359_11273623 58Ga0194113_100441753 59Ga0211736_107532529 60Ga0211735_111915515 61Ga0222714_1001407010 62Ga0222713_106112721 63Ga0222712_105177781 64Ga0181353_10075433 65Ga0181353_10112934 66Ga0181353_10422771 67Ga0181353_11522941 68Ga0196901_11434182 69Ga0181351_10282975 70Ga0181351_10539413 71Ga0181351_10782874 72Ga0212119_10641503 73Ga0208303_10039527 74Ga0208643_11109072 75Ga0209704_10620592 76Ga0209033_10489833 77Ga0209467_11232811 78Ga0209492_100035222 79Ga0209492_10012122 80Ga0209492_12365322 81Ga0209287_100283675 82Ga0209107_102147913 83Ga0209990_102975323 84Ga0209262_100432073 85Ga0209550_105484233 86Ga0209668_101213225 87Ga0209536_1002355733 88Ga0247723_10030734 89Ga0247723_11646453 90Ga0307376_101418434 91Ga0307375_106559953 92Ga0315907_100250177 93Ga0315907_100871225 94Ga0315907_101783833 95Ga0315907_101816554 96Ga0315907_102593753 97Ga0315907_111328213 98Ga0315907_111328841 99Ga0315904_107963423 100Ga0315904_112208253 101Ga0315904_114596943 102Ga0315902_111273242 103Ga0334980_0007717_2658_2819 104Ga0334994_0576760_84_242 105Ga0334996_0000905_14618_14776 106Ga0335003_0496465_285_428 107Ga0334979_0030922_346_489 108Ga0334995_0107038_1374_1535 109Ga0335012_0434131_199_354 110Ga0335031_0024041_4161_4316 111Ga0335031_0040640_1407_1568
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. 1B570J29032_1090112131 2Ga0068877_107013242 3Ga0068876_103791742 4Ga0078894_114697432 5Ga0079957_10664617 6Ga0114363_10236562 7Ga0114364_11519333 8Ga0105098_102910822 9Ga0105097_101778833 10Ga0177922_112237943 11Ga0181338_10143827
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46. 1Ga0114363_100594516 2Ga0066600_100311266 3Ga0007787_101883384 4Ga0068876_103791742 5Ga0079957_10664617 6Ga0114363_10299988 7Ga0105098_102910822 8Ga0105099_100310125 9Ga0105102_103270572 10Ga0105097_101148974 11Ga0129333_116917993 12Ga0164294_1000642825 13Ga0172373_102597303 14Ga0180120_100360617 15Ga0181347_11152912 16Ga0181356_10350935 17Ga0181359_10009996 18Ga0181359_11273623 19Ga0194113_100441753 20Ga0211736_107532529 21Ga0222714_1001407010 22Ga0222713_106112721 23Ga0181353_10112934 24Ga0196901_11434182 25Ga0181351_10282975 26Ga0209467_11232811 27Ga0209492_100035222 28Ga0209668_101213225 29Ga0315907_100871225 30Ga0315907_111328213 31Ga0335031_0040640_1407_1568
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.33% β-sheet: 0.00% Coil/Unstructured: 78.67%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF03796	DnaB_C	4.50
PF02195	ParBc	3.60
PF00216	Bac_DNA_binding	1.80
PF11753	DUF3310	0.90
PF00959	Phage_lysozyme	0.90
PF13472	Lipase_GDSL_2	0.90
PF06067	DUF932	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	4.50
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	4.50
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	1.80

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.38 %
Unclassified	root	N/A	21.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	48.65 %
Unclassified	root	N/A	21.62 %
Viruses	superkingdom	All Organisms → Viruses	29.73 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	46.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.80 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	4.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.23 %
Unclassified	root	N/A	21.62 %

Name	Rank	Taxonomy	Distribution
Asgard group	clade	All Organisms → cellular organisms → Archaea → Asgard group	46.85 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	4.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.23 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %
Unclassified	root	N/A	21.62 %

Name	Rank	Taxonomy	Distribution
Candidatus Thorarchaeota	phylum	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota	46.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.23 %
Unclassified	root	N/A	21.62 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	4.50 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Thorarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	46.85 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.23 %
Unclassified	root	N/A	21.62 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Thorarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	46.85 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	4.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.23 %
Unclassified	root	N/A	21.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Thorarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	46.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.23 %
Unclassified	root	N/A	21.62 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4.50 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.90 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300013131\|Ga0172373_10259730	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	1141	Open in IMG/M
3300002408\|B570J29032_109011213	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	566	Open in IMG/M
3300003404\|JGI25920J50251_10055970	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	1021	Open in IMG/M
3300004112\|Ga0065166_10012460	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	2330	Open in IMG/M
3300004155\|Ga0066600_10031126	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1771	Open in IMG/M
3300004240\|Ga0007787_10005548	Not Available	4796	Open in IMG/M
3300004240\|Ga0007787_10188338	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	1002	Open in IMG/M
3300005517\|Ga0070374_10660238	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	517	Open in IMG/M
3300005525\|Ga0068877_10701324	Not Available	542	Open in IMG/M
3300005527\|Ga0068876_10274848	Not Available	961	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	96.40%
Terrestrial	Environmental → Terrestrial	3.60%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.80%
Freshwater	Environmental → Aquatic → Freshwater	85.59%
Marine	Environmental → Aquatic → Marine	10.81%
Soil	Environmental → Terrestrial → Soil	1.80%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	1.80%
Coastal	Environmental → Aquatic → Marine → Coastal	7.21%
Lake	Environmental → Aquatic → Freshwater → Lake	21.62%
Lentic	Environmental → Aquatic → Freshwater → Lentic	33.33%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.80%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.90%
Pond	Environmental → Aquatic → Freshwater → Pond	2.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	14.41%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	11.71%
Unclassified	Environmental → Aquatic → Marine → Unclassified	2.70%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.80%

Habitat	Taxonomy	Distribution
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.90%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	2.70%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.90%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.90%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	31.53%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	21.62%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	14.41%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	11.71%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	7.21%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.80%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.80%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.80%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	5.41%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.80%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.70%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.81%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	9.91%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.70%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	2.70%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.80%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.90%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.90%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	29.73%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.90%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.90%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	14.41%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.80%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	6.31%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.90%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.90%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.80%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300003404	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD	Environmental	Open in IMG/M
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental	Open in IMG/M
3300004155	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11	Environmental	Open in IMG/M
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental	Open in IMG/M
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J29032_1090112131	3300002408	Freshwater	MKKQIKRTGDLAPRGVRSTIKGTYGFNEVFDHIFNEARKPDPSWKNN*
JGI25920J50251_100559703	3300003404	Freshwater Lake	MKKEIKRTGDLAPRGVKSTIKGTYGFNEVMEQIFTETRKPDPSWKNN*
Ga0065166_100124604	3300004112	Freshwater Lake	MKKLFKAREIQRPGDLAPRDVKSTIRGTYGFNEVFEHIFTEARKPDPSWKNN*
Ga0066600_100311266	3300004155	Freshwater	MKKQIKRTGDLAPRGVRSTIRGTYGFNEVFQHIFNESRRPDETWKLN*
Ga0007787_1000554813	3300004240	Freshwater Lake	MKKLFKANNEIKRPGDLAPTGVKSTIKGTYGFNEVFDHIFTEVRKPDPSWKKN*
Ga0007787_101883384	3300004240	Freshwater Lake	MKKQIKRPGDLAPQGVKSTIRGTYQFNEVFQHIFNESRKPDPSWTR*
Ga0070374_106602382	3300005517	Freshwater Lake	MKKQLKRTGDLAPRGVRSTIKGTYGFNEVFDHIFNEARKPDPSWKNN*
Ga0068877_107013242	3300005525	Freshwater Lake	MKKKPIERPGDLAPKGVKSTIKGEYGFNETFEHIFKESRKPLKQ*
Ga0068876_102748481	3300005527	Freshwater Lake	MKKKPIERPGDLAPKGVKSTIKGEYGFNETFEHIF
Ga0068876_103791742	3300005527	Freshwater Lake	MKKEIKRPEDLAPKGVKSTIKGNYSFNEVFQHIYNEARKPDEAWKSN*
Ga0049081_102768731	3300005581	Freshwater Lentic	MKKQIQRPGDLAPQGVKSTIKGNYSFNEVFEHIYNEARKPDKSWKSN*
Ga0078894_114697432	3300005662	Freshwater Lake	MKLFKANKGIQRPGDLTPKGVKSTIRGNYSFNEVMQHIFNEGRKPDPLWKSN*
Ga0079957_10664617	3300005805	Lake	MKKQIQRPGDLAPQGVKSTIKGNYSFNEVFENIFNQSRKPEESWKRS*
Ga0070748_10669154	3300006920	Aqueous	MKLFKAREIKRPEDLTPRGVKSTIRGTYGFNEVFEHIFNESRKPDPLWKSN*
Ga0099847_100008121	3300007540	Aqueous	MKLFKAQEIKRPGDLAPRGVKSTIRGTYGFNEVFEHIFNESRKPDPLWKSN*
Ga0099846_10781582	3300007542	Aqueous	MKKEIKRPGDLAPRGVKSTIKGEYGFNEVFEHIYKESRKPDPSWTR*
Ga0114347_11227013	3300008114	Freshwater, Plankton	MKKQIQRPGDLAPQGVKSTIKGNYSFNEVFENIFNQSRKPDESWKHN*
Ga0114363_100594516	3300008266	Freshwater, Plankton	MKKQIKRTGDLAPTGVKSTIKGTYGFNEVFDHIFNEARKPDPSWKNN*
Ga0114363_10236562	3300008266	Freshwater, Plankton	MKKEIKRPGDLAPTGVKSTIKGEYDFNEVFDHIYKESRKPDPSWTR*
Ga0114363_10299988	3300008266	Freshwater, Plankton	MKKEIKRTGDLAPRGVKSTIRGTYGFNEVFQHIFIEARRPDKAWKHN*
Ga0114364_10115212	3300008267	Freshwater, Plankton	MKLFKAREIERPGDLAPTGVRSTIKGTYGFNEVFDHIFNEARKPDPSWKNN*
Ga0114364_10177484	3300008267	Freshwater, Plankton	MKKEIKRPGDLAPTGVKSTIKGEYGFNEVFDHIYKESRKPDPSWTR*
Ga0114364_11519333	3300008267	Freshwater, Plankton	MKLFKAREIERPGDLAPKGVKSTIKGTYGFNEVFEHIFTEARKPDPSWKNN*
Ga0105105_105943471	3300009009	Freshwater Sediment	MKLFKANKGIQRPGDLAPKGVKSTIRGTYGFNEVMEHIFNERRKPD
Ga0105098_100745434	3300009081	Freshwater Sediment	MITLFKANKEIKRPGDLAPKGVKSTIKGNYGFNEVMEHIFNEMRKPDPSWKNN*
Ga0105098_102910822	3300009081	Freshwater Sediment	MKKKKEIETPGDLAPLGVKSTIKGNYTFNEVFQHIHKEAHKPIK*
Ga0105099_100310125	3300009082	Freshwater Sediment	MKLFKASKEIKRPGDLAPRGVKNTIRGTYGFNEVMQHIFNESRKPDPSWKKN*
Ga0105099_111015421	3300009082	Freshwater Sediment	MKKLFKANNEIKRPGDLAPRGVKSTIRGTYGFNEVFEHIFTESRKPDPSWKKN*
Ga0105103_100756173	3300009085	Freshwater Sediment	MITLFKANKEIKRPGDLAPRGVKSTIKGNYGFNEVMEHIFNEMRKPDPLWKKN*
Ga0105102_103270572	3300009165	Freshwater Sediment	MVTLFKAKKEIKRPGDLTPKGVKSTIKGNYGFNEVMEHIFNEMRKPDPSWKKN*
Ga0105102_105668022	3300009165	Freshwater Sediment	MKLFKANKGIKRPGDLAPRGVKSTIKGNYGFNEVMEHIFNEMRKPDPSWKKN*
Ga0105104_109437593	3300009168	Freshwater Sediment	MKKLFKANNEIKRPGDLAPTGVRSTIKGTYGFNEVFDHIFNEARKPDPSW
Ga0105097_101148974	3300009169	Freshwater Sediment	MKLFKANKGIQRPGDLAPKGVKSTIKGNYGFNEVMEHIFNEMRKPDPSWKKN*
Ga0105097_101778833	3300009169	Freshwater Sediment	MITLFKANKEIKRPGDLAPRGVKSTIKGNYDFNEVMEHVFNEMRKPDPSWKKN*
Ga0129333_116917993	3300010354	Freshwater To Marine Saline Gradient	MKKQIKRPGDLAPRGVKSTIRGTYEFNEVFQHIFNESRKPDEAWKLN*
Ga0151620_100140211	3300011268	Freshwater	MKKQIQRPGDLAPQGVRSTIKGNYGFNEVFEHIYNEARKPDPAWNQK*
Ga0136712_10055464	3300012266	Freshwater	MKKQIKRTGDLAPRGVRSTIKGTYSFNEVFDHIFNEARKPDLSWKNN*
Ga0157210_100024827	3300012665	Freshwater	MRKLFKAREIERPGDLAPTGVKSTIRGTYGFNEVFEHIFTEARKPDPSWKNN*
Ga0164293_101257514	3300013004	Freshwater	MKKQIKRTGDLAPTGVRSTIKGTYGFNEVFDHIFNEARKPDPSWKNN*
Ga0164294_1000642825	3300013006	Freshwater	MKKLFKTREIQRTGDLAPTGVRSTIKGTYEFNEVFDHIFNEARKPDASWKNN*
(restricted) Ga0172373_102597303	3300013131	Freshwater	MKKEIKRTGDLAPRGVKSTIKGNYSFNEVFQLIYNEARKPDKAWKHN*
Ga0177922_112237943	3300013372	Freshwater	TGDLAPRGVRSTIKGTYEFNEVMEQIFTEARKPDPSWKNN*
Ga0181338_10143827	3300015050	Freshwater Lake	MKKEIKRTGDLAPKGVKSTIKGTYGFNEVMEQIFTETRKPDPS
Ga0181338_10374282	3300015050	Freshwater Lake	MKKQLKRTGDLAPRGVRSTIKGTYEFNEVMEQIFTEARKPDPSWKNN*
Ga0181338_10419434	3300015050	Freshwater Lake	MKKEIKRTGDLAPRGVKSTIKGTYGFNEVMEQIFTETRKPD
Ga0180120_100360617	3300017697	Freshwater To Marine Saline Gradient	MMKLFKAQEIKRPGDLAPRGVKSTIRGTYGFNEVFEHIFNESRKPDPLWKSN
Ga0181339_100383010	3300017700	Freshwater Lake	MKKEIKRTGDLAPRVVKSTIKGTYGFNEVMKQIFTEARKPDPSWK
Ga0181347_11152912	3300017722	Freshwater Lake	MMKLFKAREIERPGDLAPTGVRSTIKGTYGFNEVFDHIFTETRKPDPSWKNN
Ga0181347_12101571	3300017722	Freshwater Lake	MKKEIKRTGDLAPRGVKSTIKGTYGFNEVFDQIFNEARKPDP
Ga0181362_10280842	3300017723	Freshwater Lake	MKKEIKRTGDLAPRGVKSTIKGTYGFNEVMEQIFTETRKTDPSWKNN
Ga0181344_101343810	3300017754	Freshwater Lake	MKKLFKAREIQRPGDLAPRDVKSTIRGTYGFNEVFEHIFTEARKPDPSWKNN
Ga0181344_10806272	3300017754	Freshwater Lake	MKKEIKRPGDLAPTGVKSTIKGDYGFNEVFDHIYKESRKPDPSWTR
Ga0181356_10350935	3300017761	Freshwater Lake	MKKQLKRTGDLAPRGVRSTIKGTYEFNEVMEQIFTEARKPDPSWKNN
Ga0181355_11680805	3300017785	Freshwater Lake	MKKEIKRTGDLAPKGVKSTIKGTYGFNEVMEQIFTETR
Ga0181361_1174032	3300019783	Freshwater Lake	MKKEIKRTGDLAPKGVKSTIKGTYGFNEVMEQIFTETRKPDPSWKNN
Ga0181359_10009996	3300019784	Freshwater Lake	MKKEIKRTGDLAPRGVKSTIKGTYGFNEVMEQIFTETRKPDPSWKNN
Ga0181359_11273623	3300019784	Freshwater Lake	MKKQIKRTGDLAPRGVRSTIKGTYSFNEVFDYIFNEARKPDLSWKNN
Ga0194113_100441753	3300020074	Freshwater Lake	MKKEIKRTGDLAPKGVKSTIKGNYSFNKVFEHIYNEARKPDESWKHK
Ga0211736_107532529	3300020151	Freshwater	MKKEIKRTGDLAPTGVKSTIKGEYDFNEVFEHIYKESRKPDASWTK
Ga0211735_111915515	3300020162	Freshwater	MKKEIKRTGDLAPRGVKSTIRGTYGFNEVFEHIFIEARRPDKAWKHN
Ga0222714_1001407010	3300021961	Estuarine Water	MKKQIQRPGDLAPQGVRSTIKGNYGFNEVFEHIYNEARKPDPAWNQK
Ga0222713_106112721	3300021962	Estuarine Water	MKKQIQRPGDLAPQGVKSTIRGNYSFNEVFENIFNQSRKPDKAWKIK
Ga0222712_105177781	3300021963	Estuarine Water	MKKQIQRPGDLAPQGVKSTIKGNYSFNEVFEHIYNEARKPDPAWNQK
Ga0181353_10075433	3300022179	Freshwater Lake	MKKLFKANNEIKRPGDLAPTGVKSTIKGTYGFNEVFDHIFTEVRKPDPSWKKN
Ga0181353_10112934	3300022179	Freshwater Lake	MKKQIKRPGDLAPQGVRSTIRGTFGFNEVFEHIHNEARKPDPSWKRN
Ga0181353_10422771	3300022179	Freshwater Lake	IFKANKGIQRPGDLTPKGVKSTIRGNYSFNEVMQHIFNEGRKPDPLWKSN
Ga0181353_11522941	3300022179	Freshwater Lake	MKLFKANKGIQRPGDLTPKGVKSTIRGNYSFNEVMQHIFNEGRK
Ga0196901_11434182	3300022200	Aqueous	MKKEIKRPGDLAPRGVKSTIKGEYGFNEVFEHIYKESRKPDPSWTR
Ga0181351_10282975	3300022407	Freshwater Lake	MMKLFKANKGIQRPGDLTPKGVKSTIRGNYSFNEVMQHIFNEGRKPDPLWKSN
Ga0181351_10539413	3300022407	Freshwater Lake	MKKQIKRPGDLAPRGVKSTIRGTYGFNEVFQHIFNESRRPDEAWKLN
Ga0181351_10782874	3300022407	Freshwater Lake	MKKEIKRTGDLAPRGVKSTIKGTYGFNEVFDQIFNEARKPDPSWKNN
Ga0212119_10641503	3300022543	Freshwater	MKKLFKANNEIKRPGDLAPKGVKSTIRGTYGFNEVFEHIFTEARKPDPSWKKN
Ga0208303_10039527	3300025543	Aqueous	MKLFKAQEIKRPGDLAPRGVKSTIRGTYGFNEVFEHIFNESRKPDPLWKSN
Ga0208643_11109072	3300025645	Aqueous	MKLFKAREIKRPEDLTPRGVKSTIRGTYGFNEVFEHIFNESRKPDPLWKSN
Ga0209704_10620592	3300027693	Freshwater Sediment	MKLFKANKGIKRPGDLTPKGVKSTIKGNYGFNEVMEHIFNEMRKPDPSWKKN
Ga0209033_10489833	3300027697	Freshwater Lake	MKKQIKRPGDLAPQGVKSTIRGTYQFNEVFQHIFNESRKPDPSWTR
Ga0209467_11232811	3300027719	Freshwater	MKKQIKTPGDLAPRGVKSTIRGTYEFNEVFEHIYNESRKPDPSWKLK
Ga0209492_100035222	3300027721	Freshwater Sediment	MITLFKANKEIKRPGDLAPRGVKSTIKGNYDFNEVMEHVFNEMRKPDPSWKKN
Ga0209492_10012122	3300027721	Freshwater Sediment	MVTLFKAKKEIKRPGDLTPKGVKSTIKGNYGFNEVMEHIFNEMRKPDPSWKKN
Ga0209492_12365322	3300027721	Freshwater Sediment	MKKKKEIETPGDLAPLGVKSTIKGNYTFNEVFQHIHKEAHKPIK
Ga0209287_100283675	3300027792	Freshwater Sediment	MKKLFKANNEIKRPGDLAPRGVKSTIRGTYGFNEVFEHIFTESRKPDPSWKKN
Ga0209107_102147913	3300027797	Freshwater And Sediment	MKKEIKRTGDLAPRGVRSTIKGTYGFNEVFDHIFNEARKPDSSWKNN
Ga0209990_102975323	3300027816	Freshwater Lake	MKKEIKRPEDLAPKGVKSTIKGNYSFNEVFQHIYNEARKPDEAWKSN
Ga0209262_100432073	3300027841	Freshwater	MKKQIKRTGDLAPRGVRSTIRGTYGFNEVFQHIFNESRRPDETWKLN
Ga0209550_105484233	3300027892	Freshwater Lake	MKKQIKRTGDLAPRGVRSTIKGTYSFNEVFDHIFNETRKPDLSWKNN
Ga0209668_101213225	3300027899	Freshwater Lake Sediment	MKLFKAREIERPADLAPTGVKSTIRGTYGFNEVFEHIFTEARKPDPSWKNN
Ga0209536_1002355733	3300027917	Marine Sediment	MMKLFKAREIKRPEDLTPRGVKSTIRGTHGFNEVFEHIFNESRKPDPLWKSN
Ga0247723_10030734	3300028025	Deep Subsurface Sediment	MMKLFKAREIERPGDLAPTGVKSTIKGTYGFNEVFDHIFNEARKPDPSWKNN
Ga0247723_11646453	3300028025	Deep Subsurface Sediment	GDLAPTGVRSTIKGTYGFNEVFEHIFTEARKPDPSWKNN
Ga0307376_101418434	3300031578	Soil	MKKEIKRPGDLAPRGVKSTIKGEYDFNEVFEHIYKESRKPDPSWTK
Ga0307375_106559953	3300031669	Soil	MKKEIKRPGDLAPRGVKSTIRGTYGFNEVFEHIYKESRKPDPSWTR
Ga0315907_100250177	3300031758	Freshwater	MKKQIQRPGDLAPQGVKSTIKGNYSFNEVFENIFNQSRKPDESWKHN
Ga0315907_100871225	3300031758	Freshwater	MKKQIQRPGDLAPQGVKSTIKGNYSFNEVFEHIYNEARKPDKSWKSN
Ga0315907_101783833	3300031758	Freshwater	MKKQIKRTGDLAPTGVKSTIKGTYGFNEVFDHIFNEARKPDPSWKNN
Ga0315907_101816554	3300031758	Freshwater	MKKEIKRTGDLAPRGVKSTIRGTYGFNEVFQHIFIEARRPDKAWKHN
Ga0315907_102593753	3300031758	Freshwater	MKKEIKRPGDLAPTGVKSTIKGEYDFNEVFDHIYKESRKPDPSWTR
Ga0315907_111328213	3300031758	Freshwater	MKKKPIERPGDLAPKGVKSTIKGEYGFNETFEHIFKESRKPLKQ
Ga0315907_111328841	3300031758	Freshwater	MKKQIKRPGDLAPTGVKSTIKGEYGFNEVFDHIYKESRKPDPSWTR
Ga0315904_107963423	3300031951	Freshwater	MKLFKANKGIQRPGDLTPKGVKSTIRGNYSFNEVMQHIFNEGRKPDPLWKSN
Ga0315904_112208253	3300031951	Freshwater	MKKQIKRPGDLAPRGVKSTIRGTYEFNEVFQHIFIEARRPDKAWKHN
Ga0315904_114596943	3300031951	Freshwater	RQIQDCKAMKKKPIERPGDLAPKGVKSTIKGEYGFNETFEHIFKESRKPLKQ
Ga0315902_111273242	3300032093	Freshwater	MKKQIKRPGDLAPQGVKSTIRGTYQFNEVFQHIFNESRKPDEAWKLN
Ga0334980_0007717_2658_2819	3300033816	Freshwater	MKKLFKANNEIKRPGDLAPRGVKSTIKGTYGFNEVFEHIFTESRKPDPSWKKN
Ga0334994_0576760_84_242	3300033993	Freshwater	MKKLFKTREIQRTGDLAPTGVRSTIKGTYGFNEVFDHIFNEARKPDPSWKNN
Ga0334996_0000905_14618_14776	3300033994	Freshwater	MKKLFKAREIQRTGDLAPRGVKSTIRGTYGFNEVFEHIFTEARKPDPSWKNN
Ga0335003_0496465_285_428	3300033995	Freshwater	MKKQIKRTGDLAPRGVKSTIKGTYGFNEVFDHIFTEARKPDPSWKNN
Ga0334979_0030922_346_489	3300033996	Freshwater	MKKQIKRTGDLAPTGVRSTIKGTYGFNEVFDHIFNEARKPDPSWKNN
Ga0334995_0107038_1374_1535	3300034062	Freshwater	MMKKLFKTREIQRTGDLAPTGVRSTIKGTYGFNEVFDHIFNEARKPDPSWKNN
Ga0335012_0434131_199_354	3300034093	Freshwater	MKLFKAREIERPGDLAPTGVRSTIKGTYGFNEVFDHIFNEARKPDPSWKNN
Ga0335031_0024041_4161_4316	3300034104	Freshwater	MKLFKAREIERPGDLAPTGVKSTIKGTYGFNEVFDHIFNEARKPDPSWKNN
Ga0335031_0040640_1407_1568	3300034104	Freshwater	MKKLFKANNEIKRPGDLAPRGVKSTIRGTYGFNEVFEHIFTEARKPDPSWKKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters