Scaffold Ga0209711_10246856

Overview

Basic Information

• Taxon OID: 3300027788
• Scaffold ID: Ga0209711_10246856
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 798
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F028622	Metagenome	191	Y
F092711	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209711_102468561	F028622	N/A	MIDEDKTYENEVKPTSDDRGSLDLTLVIENLNKKIKNLSGLEKIHKETNGDLRIHILKLDKEIYQLKKDMAFQKETNEMDIIQKDNEIGRLIKKITEK
Ga0209711_102468562	F020603	AGGAG	MINRLLLIIFCLFLANCSTYKPLINPETSKDKHSGNVIAGDYWKDLHACRYIHDQNTGIAVKTLRISDEKMFVKKCMENYGYSILR
Ga0209711_102468563	F092711	N/A	LTGRSKSFTADTLQDCAKQFFDEFGEASKEVVKCQTFEVNNPTEFLIVGGNESCLGYLKQMQQGVINDK