Scaffold Ga0209448

Basic Information
Taxon OID	3300027783 Open in IMG/M
Scaffold ID	Ga0209448_10003209 Open in IMG/M
Source Dataset Name	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027783 Open in IMG/M

Scaffold ID

Ga0209448_10003209 Open in IMG/M

Source Dataset Name

Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5051
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5051

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Calvert Island, British Columbia, Canada

Coordinates

Lat. (^o)

51.62

Long. (^o)

-128.09

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F010114	Metagenome / Metatranscriptome	308	Y
F017965	Metagenome / Metatranscriptome	237	Y
F092546	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209448_100032091	F092546	GGAG	VLSEVQYRCVGRYREAVIVLLLTVLAFSVRLYRVDFNSLSEDEVAKWTAVQEYRHG
Ga0209448_100032093	F004823	AGGAG	MYATKAINGVPAIQRDGQSVLSVCHQDWEFANWLCALLNELGDKSELLLNEQDWEWLKAIDSPFRRTAQHA
Ga0209448_100032094	F017965	GAGG	MDSKANSRIALTDMSEKIEHRDALYLFACHLEWLTKRNLAAYQDLLAALDDHDGDIRRLAESLLHRSSPRPERTCNSYRILVK
Ga0209448_100032095	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQAKCLVTRDVLPEGLIVDLTEVSYIDAVGEQLLKWLASVGTLFVPGNVYAIAICDRLRLPPMQRISERRKRRYGNNKERSAINHSHPVKAI
Ga0209448_100032096	F001596	AGGAG	MSWFHSSRAAVDARNYASPGEIVACFQDQRNVLVRLAFFITGDQATAEQAVVQACEMTLQGNSPFRVWLFEWAKAATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQGDAEERAPSLDLILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHATTWLHDGHVKAVEENRDASHATQF
Ga0209448_100032097	F010114	GAGG	MIIELNDDDTRLLHTVLLEQAQEHLSYADTSEVAERLYKLATRLERPVRATNITIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209448_10003209

Overview

Ecosystem & Geography

Associated Families

Sequences